true1997-11-012024-01-24131NIRS_PARPNTranscriptional analysis of the nirS gene, encoding cytochrome cd1 nitrite reductase, of Paracoccus pantotrophus LMD 92.63.Saunders N.F.W.Ferguson S.J.Baker S.C.doi:10.1099/00221287-146-2-5092000Microbiology146509-516NUCLEOTIDE SEQUENCE [GENOMIC DNA]LMD 92.63The cytochrome c domain of dimeric cytochrome cd(1) of Paracoccus pantotrophus can be produced at high levels as a monomeric holoprotein using an improved c-type cytochrome expression system in Escherichia coli.Gordon E.H.J.Steensma E.Ferguson S.J.doi:10.1006/bbrc.2001.44252001Biochem. Biophys. Res. Commun.281788-794NUCLEOTIDE SEQUENCE [GENOMIC DNA]The anatomy of a bifunctional enzyme: structural basis for reduction of oxygen to water and synthesis of nitric oxide by cytochrome cd1.Fueloep V.Moir J.W.B.Ferguson S.J.Hajdu J.doi:10.1016/0092-8674(95)90390-91995Cell81369-377X-RAY CRYSTALLOGRAPHY (1.5 ANGSTROMS) OF 30-596 IN COMPLEX WITH HEME C AND HEME D1COFACTORCytochrome cd1 structure: unusual haem environments in a nitrite reductase and analysis of factors contributing to beta-propeller folds.Baker S.C.Saunders N.F.W.Willis A.C.Ferguson S.J.Fueloep V.Hajdu J.doi:10.1006/jmbi.1997.10701997J. Mol. Biol.269440-455X-RAY CRYSTALLOGRAPHY (1.2 ANGSTROMS)Haem-ligand switching during catalysis in crystals of a nitrogen-cycle enzyme.Williams P.A.Fueloep V.Garman E.F.Saunders N.F.W.Ferguson S.J.Hajdu J.doi:10.1038/387751997Nature389406-412X-RAY CRYSTALLOGRAPHY (1.8 ANGSTROMS)Proton-coupled structural changes upon binding of carbon monoxide to cytochrome cd1: a combined flash photolysis and X-ray crystallography study.Sjoegren T.Svensson-Ek M.Hajdu J.Brzezinski P.doi:10.1021/bi000179q2000Biochemistry3910967-10974X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS)X-ray crystallographic study of cyanide binding provides insights into the structure-function relationship for cytochrome cd1 nitrite reductase from Paracoccus pantotrophus.Jafferji A.Allen J.W.A.Ferguson S.J.Fueloep V.doi:10.1074/jbc.m0013772002000J. Biol. Chem.27525089-25094X-RAY CRYSTALLOGRAPHY (1.59 ANGSTROMS)Structure of the bound dioxygen species in the cytochrome oxidase reaction of cytochrome cd1 nitrite reductase.Sjoegren T.Hajdu J.doi:10.1074/jbc.m0113122002001J. Biol. Chem.27613072-13076X-RAY CRYSTALLOGRAPHY (1.46 ANGSTROMS)The structure of an alternative form of Paracoccus pantotrophus cytochrome cd1 nitrite reductase.Sjoegren T.Hajdu J.doi:10.1074/jbc.m1036572002001J. Biol. Chem.27629450-29455X-RAY CRYSTALLOGRAPHY (2.1 ANGSTROMS)2.00A/B=30-5961.80A/B=30-5961.80A/B=30-5961.60A/B=30-5961.59A/B=30-5961.40A/B=30-5962.10A/B=30-5962.40A/B=30-5962.50A/B=30-5961.60A/B=30-5961.60A/B=30-5961.46A/B=30-5961.28A/B=30-596Ferroheme CHeme DN-cyclohexyltaurineBacteria4531C-terminal (heme d1) domain of cytochrome cd1-nitrite reductaseCytochrome c-like domainCyt_c-like_domCyt_c-like_dom_sfCyt_cd1_C_sfHaem_d1_sfCytochrom_D1Cytochrome_CBB3C-terminal (heme d1) domain of cytochrome cd1-nitrite reductaseCytochrome cCYTCNitrite reductase1.7.2.1Cytochrome cd1Cytochrome oxidaseHydroxylamine reductase1.7.99.1nirSBinds 1 heme c group covalently per subunit.Binds 1 heme d1 group per subunit.Homodimer.129Nitrite reductase6248130596Cytochrome c77162N-terminal tail76D1-heme domain163axial binding residue46axial binding residue5457covalent94covalent97axial binding residue98108122138203axial binding residue229232245272292420536583A28TA130T21439414245505561638093951051071121181201271321341361421441461571681741761791811831941961972022062072122132152182232282332392442472532562582612662692762832852862932963013023043073123183203233253293343363453463493503553593683713783843893903923943994004034044104124164224264274294304474504524544564594654814864934964995035045065105125165195215255335395435515595645655685695745815875885922002-11-082true653836b046ea99db238c583b6591b313c2bd2MRQRTPFARPGLLASAALALVLGPLAASAQEQVAPPKDPAAALEDHKTRTDNRYEPSLDNLAQQDVAAPGAPEGVSALSDAQYNEANKIYFERCAGCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYGSPAGMPNWGTSGELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQENDWDLENLFSVTLRDAGQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLDNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFNVYNTMTDTYtruetruetruetrue