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Protein
Submitted name:

Scaffolding dockerin binding protein A

Gene

sdbA

Organism
Clostridium thermocellum (Ruminiclostridium thermocellum)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Scaffolding dockerin binding protein AImported
Gene namesi
Name:sdbAImported
OrganismiClostridium thermocellum (Ruminiclostridium thermocellum)Imported
Taxonomic identifieri1515 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminiclostridium

Pathology & Biotechi

Chemistry databases

DrugBankiDB02325 Isopropyl Alcohol

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 28Sequence analysisAdd BLAST28
ChainiPRO_500416140229 – 631Sequence analysisAdd BLAST603

Interactioni

Protein-protein interaction databases

MINTiP71143

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2BM3X-ray1.80A29-191[»]
4FL4X-ray2.80B/E/H/K27-200[»]
ProteinModelPortaliP71143
SMRiP71143
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP71143

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini450 – 513SLHInterPro annotationAdd BLAST64
Domaini514 – 572SLHInterPro annotationAdd BLAST59
Domaini577 – 631SLHInterPro annotationAdd BLAST55

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili259 – 279Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108PCS Bacteria
ENOG4111IBF LUCA

Family and domain databases

InterProiView protein in InterPro
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR002102 Cohesin_dom
IPR001119 SLH_dom
PfamiView protein in Pfam
PF00963 Cohesin, 1 hit
PF00395 SLH, 3 hits
SUPFAMiSSF49384 SSF49384, 1 hit
PROSITEiView protein in PROSITE
PS51272 SLH, 3 hits

Sequencei

Sequence statusi: Complete.

P71143-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKKKRLISL LLAVFIAVAC LPAGIARADK ASSIELKFDR NKGEVGDILI
60 70 80 90 100
GTVRINNIKN FAGFQVNIVY DPKVLMAVDP ETGKEFTSST FPPGRTVLKN
110 120 130 140 150
NAYGPIQIAD NDPEKGILNF ALAYSYIAGY KETGVAEESG IIAKIGFKIL
160 170 180 190 200
QKKSTAVKFQ DTLSMPGAIS GTQLFDWDGE VITGYEVIQP DVLSLGDEPY
210 220 230 240 250
ETPGTDIPIS DNPAATPSST PSVTPSPEVK PTQTPSPAEN SAKVELEPVL
260 270 280 290 300
DNATGEAKAA IDEEKLNKAL DEAKKSEDDK LVELNIKKVE NADAYIQQLP
310 320 330 340 350
AKFLIKSDAE YKLRIATEQG IIEVPANMLN TADISKLVKN DSVVEFVIRK
360 370 380 390 400
VKVDELGAEL KEKIGNRPVI DISVVVDGKK VEWSNYKAKV KISIPYKPDA
410 420 430 440 450
KELENHEHIV VLHIDDAGKA VSVPSGKYEP SLGVVTFETN HLSKYAVSYV
460 470 480 490 500
YKTFADIGSY AWAKKQIEVL ASKGVINGTS DTTFTPQADI TRADFMILLV
510 520 530 540 550
KALGLTAEVT SNFDDVSEKD YYYEYVGIAK ELGITTGVGN NKFNPKAKIT
560 570 580 590 600
RQDMMVLTTN ALRIAGKISS TGTRADVERF SDKDQIASYA VEGVATLVKE
610 620 630
GIVVGSGDII NPRGNASRAE LAAIIYKIYY K
Length:631
Mass (Da):68,619
Last modified:February 1, 1997 - v1
Checksum:iC803F87C7240ED12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49980 Genomic DNA Translation: AAB07763.1
PIRiJC6031

Genome annotation databases

GeneIDi35804456

Similar proteinsi

Entry informationi

Entry nameiP71143_CLOTM
AccessioniPrimary (citable) accession number: P71143
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: May 23, 2018
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

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