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Protein
Submitted name:

Scaffolding dockerin binding protein A

Gene

sdbA

Organism
Clostridium thermocellum (Ruminiclostridium thermocellum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Scaffolding dockerin binding protein AImported
Gene namesi
Name:sdbAImported
OrganismiClostridium thermocellum (Ruminiclostridium thermocellum)Imported
Taxonomic identifieri1515 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminiclostridium

Pathology & Biotechi

Chemistry

DrugBankiDB02325. Isopropyl Alcohol.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence analysisAdd
BLAST
Chaini29 – 631603Sequence analysisPRO_5004161402Add
BLAST

Interactioni

Protein-protein interaction databases

MINTiMINT-1204650.
STRINGi203119.Cthe_1307.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BM3X-ray1.80A29-191[»]
4FL4X-ray2.80B/E/H/K27-199[»]
ProteinModelPortaliP71143.
SMRiP71143. Positions 30-195.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP71143.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini450 – 51364SLH (S-layer homology)InterPro annotationAdd
BLAST
Domaini514 – 57259SLH (S-layer homology)InterPro annotationAdd
BLAST
Domaini577 – 63155SLH (S-layer homology)InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108PCS. Bacteria.
ENOG4111IBF. LUCA.

Family and domain databases

Gene3Di2.60.40.680. 1 hit.
InterProiIPR008965. Carb-bd_dom.
IPR002102. Cohesin_dom.
IPR001119. SLH_dom.
[Graphical view]
PfamiPF00963. Cohesin. 1 hit.
PF00395. SLH. 3 hits.
[Graphical view]
SUPFAMiSSF49384. SSF49384. 1 hit.
PROSITEiPS51272. SLH. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P71143-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKKKRLISL LLAVFIAVAC LPAGIARADK ASSIELKFDR NKGEVGDILI
60 70 80 90 100
GTVRINNIKN FAGFQVNIVY DPKVLMAVDP ETGKEFTSST FPPGRTVLKN
110 120 130 140 150
NAYGPIQIAD NDPEKGILNF ALAYSYIAGY KETGVAEESG IIAKIGFKIL
160 170 180 190 200
QKKSTAVKFQ DTLSMPGAIS GTQLFDWDGE VITGYEVIQP DVLSLGDEPY
210 220 230 240 250
ETPGTDIPIS DNPAATPSST PSVTPSPEVK PTQTPSPAEN SAKVELEPVL
260 270 280 290 300
DNATGEAKAA IDEEKLNKAL DEAKKSEDDK LVELNIKKVE NADAYIQQLP
310 320 330 340 350
AKFLIKSDAE YKLRIATEQG IIEVPANMLN TADISKLVKN DSVVEFVIRK
360 370 380 390 400
VKVDELGAEL KEKIGNRPVI DISVVVDGKK VEWSNYKAKV KISIPYKPDA
410 420 430 440 450
KELENHEHIV VLHIDDAGKA VSVPSGKYEP SLGVVTFETN HLSKYAVSYV
460 470 480 490 500
YKTFADIGSY AWAKKQIEVL ASKGVINGTS DTTFTPQADI TRADFMILLV
510 520 530 540 550
KALGLTAEVT SNFDDVSEKD YYYEYVGIAK ELGITTGVGN NKFNPKAKIT
560 570 580 590 600
RQDMMVLTTN ALRIAGKISS TGTRADVERF SDKDQIASYA VEGVATLVKE
610 620 630
GIVVGSGDII NPRGNASRAE LAAIIYKIYY K
Length:631
Mass (Da):68,619
Last modified:February 1, 1997 - v1
Checksum:iC803F87C7240ED12
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49980 Genomic DNA. Translation: AAB07763.1.
PIRiJC6031.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49980 Genomic DNA. Translation: AAB07763.1.
PIRiJC6031.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2BM3X-ray1.80A29-191[»]
4FL4X-ray2.80B/E/H/K27-199[»]
ProteinModelPortaliP71143.
SMRiP71143. Positions 30-195.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-1204650.
STRINGi203119.Cthe_1307.

Chemistry

DrugBankiDB02325. Isopropyl Alcohol.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4108PCS. Bacteria.
ENOG4111IBF. LUCA.

Miscellaneous databases

EvolutionaryTraceiP71143.

Family and domain databases

Gene3Di2.60.40.680. 1 hit.
InterProiIPR008965. Carb-bd_dom.
IPR002102. Cohesin_dom.
IPR001119. SLH_dom.
[Graphical view]
PfamiPF00963. Cohesin. 1 hit.
PF00395. SLH. 3 hits.
[Graphical view]
SUPFAMiSSF49384. SSF49384. 1 hit.
PROSITEiPS51272. SLH. 3 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP71143_CLOTM
AccessioniPrimary (citable) accession number: P71143
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: May 11, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.