P71143 (P71143_CLOTM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Scaffolding dockerin binding protein A EMBL AAB07763.1

Gene names

Name:

sdbA EMBL AAB07763.1

Organism

Clostridium thermocellum EMBL AAB07763.1

Taxonomic identifier

1515 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length	631 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2BM3
Gene Ontology (GO)
Biological process	polysaccharide catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	P71143 [UniParc]. Last modified February 1, 1997. Version 1. Checksum: C803F87C7240ED12	FASTA	631	68,619
	10 20 30 40 50 60 MRKKKRLISL LLAVFIAVAC LPAGIARADK ASSIELKFDR NKGEVGDILI GTVRINNIKN 70 80 90 100 110 120 FAGFQVNIVY DPKVLMAVDP ETGKEFTSST FPPGRTVLKN NAYGPIQIAD NDPEKGILNF 130 140 150 160 170 180 ALAYSYIAGY KETGVAEESG IIAKIGFKIL QKKSTAVKFQ DTLSMPGAIS GTQLFDWDGE 190 200 210 220 230 240 VITGYEVIQP DVLSLGDEPY ETPGTDIPIS DNPAATPSST PSVTPSPEVK PTQTPSPAEN 250 260 270 280 290 300 SAKVELEPVL DNATGEAKAA IDEEKLNKAL DEAKKSEDDK LVELNIKKVE NADAYIQQLP 310 320 330 340 350 360 AKFLIKSDAE YKLRIATEQG IIEVPANMLN TADISKLVKN DSVVEFVIRK VKVDELGAEL 370 380 390 400 410 420 KEKIGNRPVI DISVVVDGKK VEWSNYKAKV KISIPYKPDA KELENHEHIV VLHIDDAGKA 430 440 450 460 470 480 VSVPSGKYEP SLGVVTFETN HLSKYAVSYV YKTFADIGSY AWAKKQIEVL ASKGVINGTS 490 500 510 520 530 540 DTTFTPQADI TRADFMILLV KALGLTAEVT SNFDDVSEKD YYYEYVGIAK ELGITTGVGN 550 560 570 580 590 600 NKFNPKAKIT RQDMMVLTTN ALRIAGKISS TGTRADVERF SDKDQIASYA VEGVATLVKE 610 620 630 GIVVGSGDII NPRGNASRAE LAAIIYKIYY K

References

[1]	"A new type of cohesin domain that specifically binds the dockerin domain of the Clostridium thermocellum cellulosome-integrating protein CipA." Leibovitz E., Beguin P. J. Bacteriol. 178:3077-3084(1996) [PubMed: 8655483] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: NCIB 10682 EMBL AAB07763.1.
[2]	"Insights into the structural determinants of cohesin-dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA." Carvalho A.L., Pires V.M., Gloster T.M., Turkenburg J.P., Prates J.A., Ferreira L.M., Romao M.J., Davies G.J., Fontes C.M., Gilbert H.J. J. Mol. Biol. 349:909-915(2005) [PubMed: 15913653] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 29-191.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

U49980 Genomic DNA. Translation: AAB07763.1.

PIR

JC6031.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2BM3	X-ray	1.80	A	29-191	[»]

ProteinModelPortal

P71143.

SMR

P71143. Positions 30-195.

ModBase

Search...

Protein-protein interaction databases

MINT

MINT-1204650.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR008965. Carb-bd_dom.
IPR002102. Cohesin_dom.
IPR018452. Cohesin_dom_subgr.
IPR001119. S-layer_homology_dom.
[Graphical view]

Gene3D

G3DSA:2.60.40.680. Cohesin. 1 hit.

Pfam

PF00963. Cohesin. 1 hit.
PF00395. SLH. 3 hits.
[Graphical view]

SUPFAM

SSF49384. Cellul_bind. 1 hit.

PROSITE

PS51272. SLH. 3 hits.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

P71143_CLOTM

Accession

Primary (citable) accession number: P71143

Entry history

Integrated into UniProtKB/TrEMBL:	February 1, 1997
Last sequence update:	February 1, 1997
Last modified:	January 25, 2012
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)