Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative multidrug export ATP-binding/permease protein YgaD

Gene

ygaD

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

May be involved in multidrug export. Transmembrane domains (TMD) form a pore in the cell membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi375 – 382ATPPROSITE-ProRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processTransport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBSUB:BSU08690-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative multidrug export ATP-binding/permease protein YgaD (EC:3.6.3.-)
Gene namesi
Name:ygaD
Ordered Locus Names:BSU08690
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 17CytoplasmicSequence analysisAdd BLAST17
Transmembranei18 – 38HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini39 – 57ExtracellularSequence analysisAdd BLAST19
Transmembranei58 – 78HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini79 – 135CytoplasmicSequence analysisAdd BLAST57
Transmembranei136 – 156HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini157 – 163ExtracellularSequence analysis7
Transmembranei164 – 184HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini185 – 243CytoplasmicSequence analysisAdd BLAST59
Transmembranei244 – 263HelicalPROSITE-ProRule annotationAdd BLAST20
Topological domaini264 – 268ExtracellularSequence analysis5
Transmembranei269 – 288HelicalPROSITE-ProRule annotationAdd BLAST20
Topological domaini289 – 580CytoplasmicSequence analysisAdd BLAST292

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003608421 – 580Putative multidrug export ATP-binding/permease protein YgaDAdd BLAST580

Proteomic databases

PaxDbiP71082.

Interactioni

Subunit structurei

Homodimer.By similarity

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100004813.

Structurei

3D structure databases

ProteinModelPortaliP71082.
SMRiP71082.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini19 – 307ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST289
Domaini341 – 576ABC transporterPROSITE-ProRule annotationAdd BLAST236

Domaini

The ATP-binding domain (NBD) and the transmembrane domain (TMD) are fused.

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1. Bacteria.
COG1132. LUCA.
InParanoidiP71082.
KOiK11085.
OMAiHERVQGM.

Family and domain databases

InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF00664. ABC_membrane. 1 hit.
PF00005. ABC_tran. 1 hit.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
PROSITEiView protein in PROSITE
PS50929. ABC_TM1F. 1 hit.
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P71082-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGVMKRYMQF VKPYKKQIFV TVLIGIVKFS IPLALPLLLK YVVDDIIQGG
60 70 80 90 100
GTASDKTTSL FTIMAIMFAL FLILRPPVEY YRQYFAQWTA SKVLYDIRAK
110 120 130 140 150
LFDHIQKLSL RFYANTRTGE VISRVINDVE QTKDFVITGL MNIWLDMLTI
160 170 180 190 200
LIVISIMLTL DVKLTLISIV LFPLYGISVK YFYGRLRKLT RERSQALAQV
210 220 230 240 250
QGHLHERIQG MPVIRSFAIE DHEQAQFNEK NGHFLDKAIR HTNWNAKTFA
260 270 280 290 300
VVNTITDLAP LIVIACAGYF VINGPLTVGT MVAFVGYIDR MYNPVRRLIN
310 320 330 340 350
SSTTLTQSIA SMDRVFEFID EPYELTDKPN AIKADQIRGG VEFQNVSFQY
360 370 380 390 400
EKDKENILHD VSLKVNRGET VALVGMSGGG KSTLVSLIPR FYDVTSGRLL
410 420 430 440 450
IDGTDIRDYE ARSLRNQVGM VLQDTFLFSE TIRENIAIGK PDATLEEIIE
460 470 480 490 500
AAKAANAHEF IMSFPEGYET RVGERGVKLS GGQKQRISIA RVFLKNPPLL
510 520 530 540 550
ILDEATSALD LESEHYIQEA MDKLAKDRTT FVVAHRLSTI THADKIVVME
560 570 580
NGTIIEIGTH DELMDYESQY KHLFTIQNLN
Length:580
Mass (Da):65,767
Last modified:January 20, 2009 - v2
Checksum:iBC72271CFF6AE72A
GO

Sequence cautioni

The sequence CAB04797 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z82044 Genomic DNA. Translation: CAB04797.1. Different initiation.
AL009126 Genomic DNA. Translation: CAB12697.2.
PIRiG69815.
RefSeqiNP_388749.1. NC_000964.3.

Genome annotation databases

EnsemblBacteriaiCAB12697; CAB12697; BSU08690.
GeneIDi936200.
KEGGibsu:BSU08690.
PATRICifig|224308.179.peg.937.

Similar proteinsi

Entry informationi

Entry nameiYGAD_BACSU
AccessioniPrimary (citable) accession number: P71082
Secondary accession number(s): Q796Z0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 20, 2009
Last modified: July 5, 2017
This is version 134 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families