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Protein

Putative HTH-type transcriptional regulator YwnA

Gene

ywnA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi24 – 47H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU36630-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator YwnA
Gene namesi
Name:ywnA
Ordered Locus Names:BSU36630
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003604201 – 133Putative HTH-type transcriptional regulator YwnAAdd BLAST133

Proteomic databases

PaxDbiP71036.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019801.

Structurei

Secondary structure

1133
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 17Combined sources13
Helixi24 – 31Combined sources8
Helixi35 – 47Combined sources13
Beta strandi50 – 52Combined sources3
Beta strandi55 – 59Combined sources5
Beta strandi61 – 64Combined sources4
Helixi71 – 78Combined sources8
Helixi96 – 120Combined sources25
Helixi125 – 128Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XD7X-ray2.30A2-133[»]
ProteinModelPortaliP71036.
SMRiP71036.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP71036.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 130HTH rrf2-typePROSITE-ProRule annotationAdd BLAST130

Sequence similaritiesi

Contains 1 HTH rrf2-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108Z40. Bacteria.
COG1959. LUCA.
HOGENOMiHOG000249815.
InParanoidiP71036.
OMAiCIVGANI.
PhylomeDBiP71036.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51197. HTH_RRF2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P71036-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINSRLAVAI HILSLISMDE KTSSEIIADS VNTNPVVVRR MISLLKKADI
60 70 80 90 100
LTSRAGVPGA SLKKDPADIS LLEVYRAVQK QEELFAVHEN PNPKCPVGKK
110 120 130
IQNALDETFE SVQRAMENEL ASKSLKDVMN HLF
Length:133
Mass (Da):14,711
Last modified:February 1, 1997 - v1
Checksum:i6F46176B2603BF70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y08559 Genomic DNA. Translation: CAA69860.1.
AL009126 Genomic DNA. Translation: CAB15680.1.
PIRiD70063.
RefSeqiNP_391544.1. NC_000964.3.
WP_003227734.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15680; CAB15680; BSU36630.
GeneIDi936952.
KEGGibsu:BSU36630.
PATRICi18979354. VBIBacSub10457_3839.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y08559 Genomic DNA. Translation: CAA69860.1.
AL009126 Genomic DNA. Translation: CAB15680.1.
PIRiD70063.
RefSeqiNP_391544.1. NC_000964.3.
WP_003227734.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XD7X-ray2.30A2-133[»]
ProteinModelPortaliP71036.
SMRiP71036.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019801.

Proteomic databases

PaxDbiP71036.

Protocols and materials databases

DNASUi936952.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15680; CAB15680; BSU36630.
GeneIDi936952.
KEGGibsu:BSU36630.
PATRICi18979354. VBIBacSub10457_3839.

Phylogenomic databases

eggNOGiENOG4108Z40. Bacteria.
COG1959. LUCA.
HOGENOMiHOG000249815.
InParanoidiP71036.
OMAiCIVGANI.
PhylomeDBiP71036.

Enzyme and pathway databases

BioCyciBSUB:BSU36630-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP71036.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51197. HTH_RRF2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYWNA_BACSU
AccessioniPrimary (citable) accession number: P71036
Secondary accession number(s): Q794Z7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.