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Protein

Putative HTH-type transcriptional regulator YwnA

Gene

ywnA

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi24 – 4724H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU36630-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator YwnA
Gene namesi
Name:ywnA
Ordered Locus Names:BSU36630
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 133133Putative HTH-type transcriptional regulator YwnAPRO_0000360420Add
BLAST

Proteomic databases

PaxDbiP71036.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019801.

Structurei

Secondary structure

1
133
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi5 – 1713Combined sources
Helixi24 – 318Combined sources
Helixi35 – 4713Combined sources
Beta strandi50 – 523Combined sources
Beta strandi55 – 595Combined sources
Beta strandi61 – 644Combined sources
Helixi71 – 788Combined sources
Helixi96 – 12025Combined sources
Helixi125 – 1284Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1XD7X-ray2.30A2-133[»]
ProteinModelPortaliP71036.
SMRiP71036. Positions 4-130.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP71036.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 130130HTH rrf2-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH rrf2-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108Z40. Bacteria.
COG1959. LUCA.
HOGENOMiHOG000249815.
InParanoidiP71036.
OMAiDCPVGKN.
OrthoDBiEOG63JRFP.
PhylomeDBiP71036.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51197. HTH_RRF2_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P71036-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINSRLAVAI HILSLISMDE KTSSEIIADS VNTNPVVVRR MISLLKKADI
60 70 80 90 100
LTSRAGVPGA SLKKDPADIS LLEVYRAVQK QEELFAVHEN PNPKCPVGKK
110 120 130
IQNALDETFE SVQRAMENEL ASKSLKDVMN HLF
Length:133
Mass (Da):14,711
Last modified:February 1, 1997 - v1
Checksum:i6F46176B2603BF70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y08559 Genomic DNA. Translation: CAA69860.1.
AL009126 Genomic DNA. Translation: CAB15680.1.
PIRiD70063.
RefSeqiNP_391544.1. NC_000964.3.
WP_003227734.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB15680; CAB15680; BSU36630.
GeneIDi936952.
KEGGibsu:BSU36630.
PATRICi18979354. VBIBacSub10457_3839.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y08559 Genomic DNA. Translation: CAA69860.1.
AL009126 Genomic DNA. Translation: CAB15680.1.
PIRiD70063.
RefSeqiNP_391544.1. NC_000964.3.
WP_003227734.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1XD7X-ray2.30A2-133[»]
ProteinModelPortaliP71036.
SMRiP71036. Positions 4-130.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100019801.

Proteomic databases

PaxDbiP71036.

Protocols and materials databases

DNASUi936952.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB15680; CAB15680; BSU36630.
GeneIDi936952.
KEGGibsu:BSU36630.
PATRICi18979354. VBIBacSub10457_3839.

Phylogenomic databases

eggNOGiENOG4108Z40. Bacteria.
COG1959. LUCA.
HOGENOMiHOG000249815.
InParanoidiP71036.
OMAiDCPVGKN.
OrthoDBiEOG63JRFP.
PhylomeDBiP71036.

Enzyme and pathway databases

BioCyciBSUB:BSU36630-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP71036.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51197. HTH_RRF2_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Bacillus subtilis ureABC operon."
    Cruz-Ramos H., Glaser P., Wray L.V. Jr., Fisher S.H.
    J. Bacteriol. 179:3371-3373(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "Crystal structure of a putative DNA binding protein."
    New York structural genomix research consortium (NYSGXRC)
    Submitted (JAN-2005) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS).

Entry informationi

Entry nameiYWNA_BACSU
AccessioniPrimary (citable) accession number: P71036
Secondary accession number(s): Q794Z7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: February 1, 1997
Last modified: February 17, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.