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Protein

HTH-type transcriptional regulator CzcR

Gene

czcR

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi18 – 37H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU26630-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator CzcR
Gene namesi
Name:czcR
Synonyms:czcD, yrdQ
Ordered Locus Names:BSU26630
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003341421 – 288HTH-type transcriptional regulator CzcRAdd BLAST288

Proteomic databases

PaxDbiP71025.
PRIDEiP71025.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100014566.

Structurei

3D structure databases

ProteinModelPortaliP71025.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 58HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410825D. Bacteria.
ENOG410YIC3. LUCA.
HOGENOMiHOG000233521.
InParanoidiP71025.
OMAiCISTIFI.
PhylomeDBiP71025.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P71025-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELRDLQIFK CVAHHKSITG AAKELNYVQS NVTARIKQLE NELKTPLFNR
60 70 80 90 100
HKKGVSLSPE GRKMIEYVNK ILKDVEELEQ VFLDTEIPSG ILKIGTVETV
110 120 130 140 150
RILPTIIASY YKKYPNVDLS LQAGLTEELI KKVMNHELDG AFISGPLKHS
160 170 180 190 200
ILEQYDVYTE KLTLVTSNKT FNIEDFSTTP ILVFNQGCGY RSRLEQWLKD
210 220 230 240 250
EGVLPNRMME FNILETILNS VALGLGITVV PESAVMHLAV QGKVYCHPLP
260 270 280
EKDSCISTIF IRHKDAYLTN SMRSLLKTIV EHKNMSMA
Length:288
Mass (Da):32,667
Last modified:July 1, 1997 - v2
Checksum:i84221D8422FCD26F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U62055 Genomic DNA. Translation: AAB53031.1.
U93876 Genomic DNA. Translation: AAB80909.1.
AL009126 Genomic DNA. Translation: CAB14604.1.
PIRiF69973.
RefSeqiNP_390540.1. NC_000964.3.
WP_004398672.1. NZ_JNCM01000036.1.

Genome annotation databases

EnsemblBacteriaiCAB14604; CAB14604; BSU26630.
GeneIDi937628.
KEGGibsu:BSU26630.
PATRICi18977170. VBIBacSub10457_2774.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U62055 Genomic DNA. Translation: AAB53031.1.
U93876 Genomic DNA. Translation: AAB80909.1.
AL009126 Genomic DNA. Translation: CAB14604.1.
PIRiF69973.
RefSeqiNP_390540.1. NC_000964.3.
WP_004398672.1. NZ_JNCM01000036.1.

3D structure databases

ProteinModelPortaliP71025.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100014566.

Proteomic databases

PaxDbiP71025.
PRIDEiP71025.

Protocols and materials databases

DNASUi937628.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB14604; CAB14604; BSU26630.
GeneIDi937628.
KEGGibsu:BSU26630.
PATRICi18977170. VBIBacSub10457_2774.

Phylogenomic databases

eggNOGiENOG410825D. Bacteria.
ENOG410YIC3. LUCA.
HOGENOMiHOG000233521.
InParanoidiP71025.
OMAiCISTIFI.
PhylomeDBiP71025.

Enzyme and pathway databases

BioCyciBSUB:BSU26630-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCZCR_BACSU
AccessioniPrimary (citable) accession number: P71025
Secondary accession number(s): O08188, Q796A6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: July 1, 1997
Last modified: October 5, 2016
This is version 111 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.