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Protein
Submitted name:

Lost on transformation

Gene

Plagl1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Lost on transformationImported
Submitted name:
Protein Plagl1Imported
Gene namesi
Name:Plagl1Imported
Synonyms:Lot1Imported
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi3014. Plagl1.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

Expressioni

Gene expression databases

BgeeiENSRNOG00000025587.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030918.

Structurei

3D structure databases

ProteinModelPortaliP70616.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 31C2H2-typeInterPro annotationAdd BLAST28
Domaini32 – 61C2H2-typeInterPro annotationAdd BLAST30
Domaini62 – 89C2H2-typeInterPro annotationAdd BLAST28
Domaini91 – 118C2H2-typeInterPro annotationAdd BLAST28
Domaini156 – 183C2H2-typeInterPro annotationAdd BLAST28
Domaini184 – 212C2H2-typeInterPro annotationAdd BLAST29

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili494 – 539Sequence analysisAdd BLAST46

Keywords - Domaini

Coiled coilSequence analysis, RepeatSAAS annotation, Zinc-fingerSAAS annotation

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00390000013640.
HOGENOMiHOG000294191.
HOVERGENiHBG053608.
KOiK19485.
OMAiMLPMQPM.
OrthoDBiEOG091G061O.
PhylomeDBiP70616.
TreeFamiTF332024.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR027775. C2H2_Znf_fam.
IPR027770. PLAGL1.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PANTHERiPTHR10032. PTHR10032. 2 hits.
PTHR10032:SF227. PTHR10032:SF227. 2 hits.
SMARTiSM00355. ZnF_C2H2. 7 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 7 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P70616-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPFRCQKCG KSFLTLEKFT IHNYSHTRER PFKCSKTECG KAFVSKYKLM
60 70 80 90 100
RHMATHSPQK THQCTHCEKT FNRKDHLKNH LQTHDPNKMI YACEDCGKKY
110 120 130 140 150
HTMLGYKRHM ALHSASSGDL TCGVCTLELG STEVLLDHLK SHAEEKAHHA
160 170 180 190 200
PREKKHQCDH CERCFYTRKD VRRHLVVHTG CKDFLCQFCA QRFGRKDHLT
210 220 230 240 250
RHTKKTHSQE LMQESLQAGE YQGGYQPIAP PFQIKADPMP PFQLEMPPES
260 270 280 290 300
GLDGGLPPEI HGLVLASPEE VPQPMLSMPP MQPMPEQPFT LHPGVVPSSP
310 320 330 340 350
PPIILQEHKY SPVPTSFAPF VSMPMKADLK GFCNMGLFEE FPLQECQSPV
360 370 380 390 400
KFSQCFEMAK EGFGKVTLPK ELLVDAVNIA IPGSLEISSL LGFWQLPPPP
410 420 430 440 450
PQNGFMNGTI PVGAGEPLPH RITCLAQQQP PPLLPPPPPL PLPEPLPQPQ
460 470 480 490 500
LPPQFQLQLQ PQPQMQPQMQ LQPLQLQLPQ LLPQLQPEPE PEPEPEEEEE
510 520 530 540 550
EEEEIEEEEE IEEEEEAEPE AEEEEEAEDE EEAEEEEEEP QPEEAQIAMS
560 570 580
AVNMGQPPLP PTPHVFTAGT NTAILPHFHH AFR
Length:583
Mass (Da):65,960
Last modified:February 1, 1997 - v1
Checksum:i8501071AADFB3F4B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07000258 Genomic DNA. No translation available.
U72620 mRNA. Translation: AAB67042.1.
RefSeqiNP_036892.1. NM_012760.3.
UniGeneiRn.6977.

Genome annotation databases

EnsembliENSRNOT00000030329; ENSRNOP00000030918; ENSRNOG00000025587.
GeneIDi25157.
KEGGirno:25157.
UCSCiRGD:3014. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07000258 Genomic DNA. No translation available.
U72620 mRNA. Translation: AAB67042.1.
RefSeqiNP_036892.1. NM_012760.3.
UniGeneiRn.6977.

3D structure databases

ProteinModelPortaliP70616.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030918.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000030329; ENSRNOP00000030918; ENSRNOG00000025587.
GeneIDi25157.
KEGGirno:25157.
UCSCiRGD:3014. rat.

Organism-specific databases

CTDi5325.
RGDi3014. Plagl1.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00390000013640.
HOGENOMiHOG000294191.
HOVERGENiHBG053608.
KOiK19485.
OMAiMLPMQPM.
OrthoDBiEOG091G061O.
PhylomeDBiP70616.
TreeFamiTF332024.

Gene expression databases

BgeeiENSRNOG00000025587.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR027775. C2H2_Znf_fam.
IPR027770. PLAGL1.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PANTHERiPTHR10032. PTHR10032. 2 hits.
PTHR10032:SF227. PTHR10032:SF227. 2 hits.
SMARTiSM00355. ZnF_C2H2. 7 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 7 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP70616_RAT
AccessioniPrimary (citable) accession number: P70616
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.