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Reviewed, UniProtKB/Swiss-Prot P70388 (RAD50_MOUSE)

Last modified June 16, 2009. Version 67. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    DNA repair protein RAD50
      Short name=mRad50
    EC=3.6.-.-
Gene names
Name: Rad50
OrganismMus musculus (Mouse)
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMus

Protein attributes

Sequence length1312 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Function

Component of the MRN complex, which plays a central role in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity and meiosis. The complex possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity, which are provided by MRE11A. RAD50 may be required to bind DNA ends and hold them in close proximity. This could facilitate searches for short or long regions of sequence homology in the recombining DNA templates, and may also stimulate the activity of DNA ligases and/or restrict the nuclease activity of MRE11A to prevent nucleolytic degradation past a given point. The complex may also be required for DNA damage signaling via activation of the ATM kinase. In telomeres the MRN complex may modulate t-loop formation By similarity.

Cofactor

Binds 1 zinc ion per homodimer By similarity.

Subunit structure

Component of the MRN complex composed of two heterodimers RAD50/MRE11A associated with a single NBN. Component of the BASC complex, at least composed of BRCA1, MSH2, MSH6, MLH1, ATM, BLM, RAD50, MRE11A and NBN. Found in a complex with TERF2. Interacts with RINT1. Interacts with BRCA1 via its N-terminal domain. Interacts with DCLRE1C/Artemis By similarity.

Subcellular location

Nucleus By similarity. Telomere By similarity. Note: Localizes to discrete nuclear foci after treatment with genotoxic agents By similarity.

Tissue specificity

In adult, it is expressed at very low level in most tissues, except in heart, lung and aorta. Expressed at high level in testis. Ref.1

Developmental stage

Widely expressed. Expressed at higher level in heart, liver and thymus from E18. By neonatal day 1.5, it decreases in brain, liver, gut and skin, while it is expressed in spleen. Ref.1

Domain

The zinc-hook, which separates the large intramolecular coiled coil regions, contains 2 Cys residues that coordinate one molecule of zinc with the help of the 2 Cys residues of the zinc-hook of another RAD50 molecule, thereby forming a V-shaped homodimer. The two heads of the homodimer, which constitute the ATP-binding domain, interact with the MRE11A homodimer By similarity.

Post-translational modification

Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.6

Disruption phenotype

Defects cause embryonic stem cell lethality, abnormal embryonic development and sensitivity to ionizing radiation. Ref.4

Sequence similarities

Belongs to the SMC family. RAD50 subfamily.

Contains 1 zinc-hook domain.

Ontologies

Keywords
   Biological processCell cycle
DNA damage
DNA repair
Meiosis
   Cellular componentChromosomal protein
Nucleus
Telomere
   Coding sequence diversityAlternative splicing
   DomainCoiled coil
   LigandATP-binding
Metal-binding
Nucleotide-binding
Zinc
   Molecular functionHydrolase
   PTMPhosphoprotein
   Technical termDirect protein sequencing
Gene Ontology (GO)
   Biological processDNA repair

Inferred from electronic annotation. Source: UniProtKB-KW

meiosis

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentMre11 complex

Inferred from electronic annotation. Source: InterPro

chromosome, telomeric region

Inferred from electronic annotation. Source: UniProtKB-SubCell

pronucleus

Inferred from direct assay. Source: MGI

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

nuclease activity

Inferred from electronic annotation. Source: InterPro

zinc ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Alternative products

This entry describes 4 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: P70388-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: P70388-2)

The sequence of this isoform differs from the canonical sequence as follows:
     485-545: Missing.
Note: No experimental confirmation available.
Isoform 3 (identifier: P70388-3)

Also known as: 3.1 kb splice variant;

The sequence of this isoform differs from the canonical sequence as follows:
     1-886: Missing.
Isoform 4 (identifier: P70388-4)

Also known as: 1.6 kb splice variant;

The sequence of this isoform differs from the canonical sequence as follows:
     485-496: ERELSKAEKNSS → IYFLELVRWLSG
     497-1312: Missing.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 13121312DNA repair protein RAD50
PRO_0000138642

Regions

Domain635 – 734100Zinc-hook
Nucleotide binding36 – 438ATP Potential
Coiled coil200 – 532333 Potential
Coiled coil635 – 67339 Potential
Coiled coil706 – 73429 Potential
Coiled coil776 – 942167 Potential
Coiled coil1043 – 107533 Potential
Compositional bias1201 – 123838Ala/Asp-rich (DA-box)

Sites

Metal binding6811Zinc By similarity
Metal binding6841Zinc By similarity

Amino acid modifications

Modified residue2371Phosphoserine Ref.6
Modified residue6351Phosphoserine By similarity
Modified residue6401Phosphoserine By similarity
Modified residue6901Phosphothreonine By similarity

Natural variations

Alternative sequence1 – 886886Missing in isoform 3.
VSP_012592
Alternative sequence485 – 54561Missing in isoform 2.
VSP_012593
Alternative sequence485 – 49612ERELS…EKNSS → IYFLELVRWLSG in isoform 4.
VSP_012594
Alternative sequence497 – 1312816Missing in isoform 4.
VSP_012595

Experimental info

Mutagenesis221K → M in Rad50S; hypomorphic allele that induces growth defects and cancer predisposition. Homozygous individuals die with complete bone marrow depletion as a result of progressive hematopoietic stem cell failure. Ref.5
Sequence conflict971H → Q in BAB31030. Ref.2
Sequence conflict2001G → V in AAH58180. Ref.3
Sequence conflict4741I → V in BAC40074. Ref.2
Sequence conflict7181E → A in BAC40074. Ref.2
Sequence conflict7191L → K in AAH58180. Ref.3

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: 4AF9AF9AD9E1D7A2

FASTA1,312153,488
        10         20         30         40         50         60 
MSRIEKMSIL GVRSFGIEDK DKQIISFFSP LTILVGPNGA GKTTIIECLK YICTGDFPPG 

        70         80         90        100        110        120 
TKGNTFVHDP KVAQETDVRA QIRLQFRDVN GEMVAVHRSM LCSQKNKKTE FKTLEGVITR 

       130        140        150        160        170        180 
MKHGEKVSLS SKCAEIDREM ISCLGVSKSV LNNVIFCHQE DSNWPLSEGK ALKQKFDEIF 

       190        200        210        220        230        240 
SATRYIKALD TLRQVRQTQG QKVKECQTEL KYLKQNKEKA CEIRDQITSK EAQLASSQEI 

       250        260        270        280        290        300 
VRSYEDELEP LKNRLKEIEH NLSKIMKLDN EIKALESRKK QMEKDNSELE QKMEKVFQGT 

       310        320        330        340        350        360 
DEQLNDLYHN HQRTVREKER RLVDCQRELE KLNKEARLLN QEKAELLVEQ GRLQLQADRH 

       370        380        390        400        410        420 
QEHIRARDSL IQSLATHLEL DGFERGPFSE RQIKNFHELV KERQEREAKT ASQLLSDLTD 

       430        440        450        460        470        480 
KEALKQRQLD ELRDRKSGLG RTIELKTEIL TKKQSELRHV RSELQQLEGS SDRILELDQE 

       490        500        510        520        530        540 
LTKAERELSK AEKNSSIETL KAEVMSLQNE KADLDRSLRK LDQEMEQLNH HTTTRTQMEM 

       550        560        570        580        590        600 
LTKDKTDKDE QIRKIKSRHS DELTSLLGYF PNKKQLEDWL HSKSKEINQT RDRLAKLNKE 

       610        620        630        640        650        660 
LASAEQNKNH INNELKKKEE QLSSYEDKLF DVCGSQDLES DLGRLKEEIE KSSKQRAMLA 

       670        680        690        700        710        720 
GATAVYSQFI TQLTDENQSC CPVCQRVFQT EAELQEVISD LQSKLRLAPD KLKSTESELK 

       730        740        750        760        770        780 
KKERRRDEML GLVPVRQSII DLKEKEIPEL RNRLQSVNRD IQRLKNDIEE QETLLGTIMP 

       790        800        810        820        830        840 
EEESAKVCLT DVTIMERFQM ELKDVERKIA QQAAKLQGVD LDRTVQQVNQ EKQEKQHRLD 

       850        860        870        880        890        900 
TVTSKIELNR KLIQDQQEQI QHLKSKTNEL KSEKLQIATN LQRRQQMEEQ SVELSTEVQS 

       910        920        930        940        950        960 
LNREIKDAKE QISPLETALE KLQQEKEELI HRKHTSNKMA QDKINDIKEK VKNIHGYMKD 

       970        980        990       1000       1010       1020 
IENYIQDGKD DYKKQKETEL NGVAVQLNEC EKHREKINKD MGTMRQDIDT QKIQERWLQD 

      1030       1040       1050       1060       1070       1080 
NLTLRKRRDE LKEVEEEPKQ HLKEMGQMQV LQMKNEHQKL EENIDTIKRN HSLALGRQKG 

      1090       1100       1110       1120       1130       1140 
YEDEILHFKK ELREPQFRDA EEKYREMMIV MRTTELVNKD LDIYYKTLDQ AIMKFHSMKM 

      1150       1160       1170       1180       1190       1200 
EEINKIIRDL WRSTYRGQDI EYIEIRSDAD ENVSASDKRR NYNYRVVMLK GDTALDMRGR 

      1210       1220       1230       1240       1250       1260 
CSAGQKVLAS LIIRLALAET FCLNCGILAL DEPTTNLDRE NIESLAHALV EIIKSRSQQR 

      1270       1280       1290       1300       1310 
NFQLLVITHD EDFVELLGRS EYVEKFYRVK KNMDQCSEIV KCSISSLGSY VH 

« Hide

Isoform 2.

Checksum: C8583CBF04603CD5
Show »

FASTA1,251146,317
Isoform 3 (3.1 kb splice variant).

Checksum: D52552F467A47A85
Show »

FASTA42650,408
Isoform 4 (1.6 kb splice variant).

Checksum: 8D296981D5BD922F
Show »

FASTA49657,589

References

« Hide 'large scale' references
[1]"Mouse RAD50 has limited epitopic homology to p53 and is expressed in the adult myocardium."
Kim K.K., Daud A.I., Wong S.C., Pajak L., Tsai S.-C., Wang H., Henzel W.J., Field L.J.
J. Biol. Chem. 271:29255-29264(1996) [PubMed: 8910585] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 3 AND 4), PROTEIN SEQUENCE OF 113-120; 132-140; 175-202; 230-248; 295-310; 815-832; 840-845; 1012-1026 AND 1079-1089, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
[2]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-214 AND 443-743 (ISOFORM 1).
Strain: C57BL/6J and NOD.
Tissue: Thymus.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-722 (ISOFORM 2).
Strain: NMRI.
Tissue: Mammary tumor.
[4]"Disruption of mRad50 causes embryonic stem cell lethality, abnormal embryonic development, and sensitivity to ionizing radiation."
Luo G., Yao M.S., Bender C.F., Mills M., Bladl A.R., Bradley A., Petrini J.H.J.
Proc. Natl. Acad. Sci. U.S.A. 96:7376-7381(1999) [PubMed: 10377422] [Abstract]
Cited for: FUNCTION, DISRUPTION PHENOTYPE.
[5]"Cancer predisposition and hematopoietic failure in Rad50(S/S) mice."
Bender C.F., Sikes M.L., Sullivan R., Huye L.E., Le Beau M.M., Roth D.B., Mirzoeva O.K., Oltz E.M., Petrini J.H.J.
Genes Dev. 16:2237-2251(2002) [PubMed: 12208847] [Abstract]
Cited for: FUNCTION, MUTAGENESIS OF LYS-22.
[6]"ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage."
Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J.
Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract]
Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-237, MASS SPECTROMETRY.
+Additional computationally mapped references.

Cross-references

Sequence databases

U66887 mRNA. Translation: AAC52894.1.
AK018001 mRNA. Translation: BAB31030.1.
AK087982 mRNA. Translation: BAC40074.1.
BC058180 mRNA. Translation: AAH58180.1.
IPIIPI00108335.
IPI00551249.
IPI00551329.
IPI00551367.
PIRT30845.
UniGeneMm.4888

3D structure databases

HSSPHSSP built from PDB template 1E69 based on UniProtKB Q9X0R4.
ModBaseSearch...

PTM databases

PhosphoSiteP70388.

Proteomic databases

PRIDEP70388.

Genome annotation databases

EnsemblENSMUSG00000020380. Mus musculus. [Contig view]

Organism-specific databases

MGIMGI:109292. Rad50.

Phylogenomic databases

HOGENOMP70388.
HOVERGENP70388.

Gene expression databases

ArrayExpressP70388.
BgeeP70388.
CleanExMM_RAD50.
GermOnlineENSMUSG00000020380. Mus musculus.

Family and domain databases

InterProIPR004584. Rad50.
IPR007517. Rad50_Zn_hook.
IPR003395. RecF/RecN/SMC_N.
IPR013134. Zn_hook_Rad50.
[Graphical view]
PfamPF04423. Rad50_zn_hook. 1 hit.
PF02463. SMC_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR00606. rad50. 1 hit.
PROSITEPS51131. ZN_HOOK. 1 hit.
[Graphical view]
ProtoNetSearch...

Other Resources

SOURCESearch...

Entry information

Entry nameRAD50_MOUSE
AccessionPrimary (citable) accession number: P70388
Secondary accession number(s): Q6PEB0, Q8C2T7, Q9CU59
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 2005
Last sequence update: February 1, 1997
Last modified: June 16, 2009
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHPI (Human Proteome Initiative)

Relevant documents

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents