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Protein
Submitted name:

Zinc finger protein XFDL 141

Gene

prdm9

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Zinc finger protein XFDL 141Imported
Gene namesi
Name:prdm9Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-5904911. prdm9.

Structurei

3D structure databases

ProteinModelPortaliP70043.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 95C2H2-typeInterPro annotationAdd BLAST28
Domaini96 – 123C2H2-typeInterPro annotationAdd BLAST28
Domaini124 – 151C2H2-typeInterPro annotationAdd BLAST28
Domaini152 – 179C2H2-typeInterPro annotationAdd BLAST28
Domaini180 – 207C2H2-typeInterPro annotationAdd BLAST28
Domaini208 – 235C2H2-typeInterPro annotationAdd BLAST28
Domaini235 – 262C2H2-typeInterPro annotationAdd BLAST28
Domaini263 – 290C2H2-typeInterPro annotationAdd BLAST28
Domaini291 – 318C2H2-typeInterPro annotationAdd BLAST28
Domaini319 – 346C2H2-typeInterPro annotationAdd BLAST28
Domaini347 – 374C2H2-typeInterPro annotationAdd BLAST28
Domaini375 – 402C2H2-typeInterPro annotationAdd BLAST28

Phylogenomic databases

HOVERGENiHBG018163.

Family and domain databases

Gene3Di3.30.160.60. 11 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 4 hits.
PF13912. zf-C2H2_6. 1 hit.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 12 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 12 hits.
PS50157. ZINC_FINGER_C2H2_2. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P70043-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKMKKISKD RSENIQASLS QADSDNELCR LPNKKDLPQM SQESCADGKS
60 70 80 90 100
PALRKRKSQN TKDIRLSFDC RECGQSFRKK SKLKTHFLCH TGEKPCVCVH
110 120 130 140 150
CGKRFADKYK LSLHLRIHTG ENLSVCPHCG KSYRDKTKLT VHLRIHTGET
160 170 180 190 200
PFVCPECGKG FRDASFLKSH LSIHTGEKPF VCTECGKSFR KKCELKSHLQ
210 220 230 240 250
VHTGVKQFVC TECGKSFRDR SELNIHINVH TGKTFPCTEC GKSFAAKKNL
260 270 280 290 300
KRHQMIHTGE KPHECTECGK QFLEKSKLKR HHLSHTGVKP FSCFECGEQF
310 320 330 340 350
TWKHLLQNHQ LSHTGERPFV CSECGKSFKT KASLALHCHI HTGERPFVCP
360 370 380 390 400
ECGKGFRDPT SLNSHVRRHT GEKPFACAEC GKTYTDSSTL KNHLKLHVKG
410
KYFAHSECGE S
Length:411
Mass (Da):46,616
Last modified:February 1, 1997 - v1
Checksum:i0F3984747406A23D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U65897 mRNA. Translation: AAB07010.1.
RefSeqiNP_001081458.1. NM_001087989.1.
UniGeneiXl.47185.

Genome annotation databases

GeneIDi397848.
KEGGixla:397848.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U65897 mRNA. Translation: AAB07010.1.
RefSeqiNP_001081458.1. NM_001087989.1.
UniGeneiXl.47185.

3D structure databases

ProteinModelPortaliP70043.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi397848.
KEGGixla:397848.

Organism-specific databases

CTDi56979.
XenbaseiXB-GENE-5904911. prdm9.

Phylogenomic databases

HOVERGENiHBG018163.

Family and domain databases

Gene3Di3.30.160.60. 11 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 4 hits.
PF13912. zf-C2H2_6. 1 hit.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 12 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 12 hits.
PS50157. ZINC_FINGER_C2H2_2. 12 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP70043_XENLA
AccessioniPrimary (citable) accession number: P70043
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: November 30, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.