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Protein

Capsid protein

Gene

CP

Organism
Tobacco mosaic virus (strain Korean NC 82) (TMV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Capsid protein self-assembles to form rod-shaped virions about 18 nm in diameter with a central canal enclosing the viral genomic RNA.

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
Gene namesi
Name:CP
OrganismiTobacco mosaic virus (strain Korean NC 82) (TMV)
Taxonomic identifieri31746 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageVirgaviridaeTobamovirus
Virus hostiNicotiana tabacum (Common tobacco) [TaxID: 4097]
Proteomesi
  • UP000008250 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved; by hostBy similarity
ChainiPRO_00001449202 – 159Capsid proteinAdd BLAST158

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylserine; by hostBy similarity1

Keywords - PTMi

Acetylation

Structurei

3D structure databases

ProteinModelPortaliP69689.
SMRiP69689.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the virgaviridae capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG0900011A.

Family and domain databases

Gene3Di1.20.120.70. 1 hit.
InterProiView protein in InterPro
IPR001337. TMV-like_coat.
IPR036417. TMV-like_coat_sf.
PfamiView protein in Pfam
PF00721. TMV_coat. 1 hit.
SUPFAMiSSF47195. SSF47195. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P69689-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSYSITTPSQ FVFLSSAWAD PIELINLCTN ALGNQFQTQQ ARTVVQRQFS
60 70 80 90 100
EVWKPSPQVT VRFPDSDFKV YRYNAVLDPL VTALLGAFDT RNRIIEVENQ
110 120 130 140 150
ANPTTAETLD ATRRVDDATV AIRSAINNLI VELIRGTGSY NRSSFESSSG

LVWTSGPAT
Length:159
Mass (Da):17,624
Last modified:January 23, 2007 - v2
Checksum:i5C90E8478A43DBC4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X68110 Genomic RNA. No translation available.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_TMVKR
AccessioniPrimary (citable) accession number: P69689
Secondary accession number(s): P03570
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: October 25, 2017
This is version 43 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families