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Protein

Cytochrome c-type biogenesis protein CcmE

Gene

ccmE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei130 – 1301Heme (covalent; via pros nitrogen)
Metal bindingi134 – 1341Iron (heme axial ligand)

GO - Molecular functioni

  • heme binding Source: EcoCyc
  • metal ion binding Source: UniProtKB-KW

GO - Biological processi

  • cytochrome c-heme linkage Source: EcoCyc
  • heme transport Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Cytochrome c-type biogenesis

Keywords - Ligandi

Heme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:CCME-MONOMER.
ECOL316407:JW2185-MONOMER.
MetaCyc:CCME-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Cytochrome c-type biogenesis protein CcmEUniRule annotation
Alternative name(s):
Cytochrome c maturation protein EUniRule annotation
Heme chaperone CcmEUniRule annotation
Gene namesi
Name:ccmEUniRule annotation
Synonyms:yejS
Ordered Locus Names:b2197, JW2185
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12055. ccmE.

Subcellular locationi

  • Cell inner membrane UniRule annotation; Single-pass type II membrane protein UniRule annotation; Periplasmic side UniRule annotation

  • Note: Stabilized by CcmD in the membrane.

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 88CytoplasmicUniRule annotation
Transmembranei9 – 2921Helical; Signal-anchor for type II membrane proteinUniRule annotationAdd
BLAST
Topological domaini30 – 159130PeriplasmicUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi130 – 1301H → A: Abolishes heme binding. 1 Publication
Mutagenesisi130 – 1301H → C: Can still form a covalent bond with heme, but blocks heme release transfer to cytochrome c. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 159159Cytochrome c-type biogenesis protein CcmEPRO_0000201575Add
BLAST

Proteomic databases

PaxDbiP69490.
PRIDEiP69490.

Interactioni

Subunit structurei

Forms a ternary complex with CcmC and CcmD. Interacts with CcmF. Shuttles between CcmC and CcmF for heme delivery.3 Publications

Binary interactionsi

WithEntry#Exp.IntActNotes
ccmCP0ABM16EBI-1128007,EBI-2123469

Protein-protein interaction databases

BioGridi4260483. 111 interactions.
DIPiDIP-9255N.
IntActiP69490. 6 interactions.
MINTiMINT-1503318.
STRINGi511145.b2197.

Structurei

Secondary structure

1
159
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi33 – 353Combined sources
Turni40 – 445Combined sources
Turni48 – 503Combined sources
Beta strandi58 – 669Combined sources
Turni68 – 703Combined sources
Beta strandi75 – 8511Combined sources
Beta strandi90 – 978Combined sources
Beta strandi107 – 1159Combined sources
Beta strandi117 – 1259Combined sources
Helixi137 – 1404Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1SR3NMR-A30-159[»]
ProteinModelPortaliP69490.
SMRiP69490. Positions 30-143.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP69490.

Family & Domainsi

Sequence similaritiesi

Belongs to the CcmE/CycJ family.UniRule annotation

Keywords - Domaini

Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108ZKK. Bacteria.
COG2332. LUCA.
HOGENOMiHOG000009661.
InParanoidiP69490.
KOiK02197.
OMAiHVEFAVH.
PhylomeDBiP69490.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01959. CcmE. 1 hit.
InterProiIPR004329. CcmE.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF03100. CcmE. 1 hit.
[Graphical view]
SUPFAMiSSF82093. SSF82093. 1 hit.

Sequencei

Sequence statusi: Complete.

P69490-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIRRKNRLW IACAVLAGLA LTIGLVLYAL RSNIDLFYTP GEILYGKRET
60 70 80 90 100
QQMPEVGQRL RVGGMVMPGS VQRDPNSLKV TFTIYDAEGS VDVSYEGILP
110 120 130 140 150
DLFREGQGVV VQGELEKGNH ILAKEVLAKH DENYTPPEVE KAMEANHRRP

ASVYKDPAS
Length:159
Mass (Da):17,698
Last modified:March 15, 2005 - v1
Checksum:iFA0585B8CD6446FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00008 Genomic DNA. Translation: AAA16389.1.
U00096 Genomic DNA. Translation: AAC75257.1.
AP009048 Genomic DNA. Translation: BAE76660.1.
PIRiC64989.
RefSeqiNP_416701.1. NC_000913.3.
WP_001026418.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75257; AAC75257; b2197.
BAE76660; BAE76660; BAE76660.
GeneIDi946697.
KEGGiecj:JW2185.
eco:b2197.
PATRICi32119753. VBIEscCol129921_2286.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00008 Genomic DNA. Translation: AAA16389.1.
U00096 Genomic DNA. Translation: AAC75257.1.
AP009048 Genomic DNA. Translation: BAE76660.1.
PIRiC64989.
RefSeqiNP_416701.1. NC_000913.3.
WP_001026418.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1SR3NMR-A30-159[»]
ProteinModelPortaliP69490.
SMRiP69490. Positions 30-143.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260483. 111 interactions.
DIPiDIP-9255N.
IntActiP69490. 6 interactions.
MINTiMINT-1503318.
STRINGi511145.b2197.

Proteomic databases

PaxDbiP69490.
PRIDEiP69490.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75257; AAC75257; b2197.
BAE76660; BAE76660; BAE76660.
GeneIDi946697.
KEGGiecj:JW2185.
eco:b2197.
PATRICi32119753. VBIEscCol129921_2286.

Organism-specific databases

EchoBASEiEB1986.
EcoGeneiEG12055. ccmE.

Phylogenomic databases

eggNOGiENOG4108ZKK. Bacteria.
COG2332. LUCA.
HOGENOMiHOG000009661.
InParanoidiP69490.
KOiK02197.
OMAiHVEFAVH.
PhylomeDBiP69490.

Enzyme and pathway databases

BioCyciEcoCyc:CCME-MONOMER.
ECOL316407:JW2185-MONOMER.
MetaCyc:CCME-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP69490.
PROiP69490.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01959. CcmE. 1 hit.
InterProiIPR004329. CcmE.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF03100. CcmE. 1 hit.
[Graphical view]
SUPFAMiSSF82093. SSF82093. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiCCME_ECOLI
AccessioniPrimary (citable) accession number: P69490
Secondary accession number(s): P33928, Q2MAP6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 15, 2005
Last sequence update: March 15, 2005
Last modified: September 7, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.