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Protein

Polcalcin Bra r 1

Gene
N/A
Organism
Brassica campestris (Field mustard)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Calcium bindingi14 – 25121PROSITE-ProRule annotationAdd
BLAST
Calcium bindingi49 – 60122PROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Calcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Polcalcin Bra r 1
Alternative name(s):
Calcium-binding pollen allergen Bra r 1
Allergen: Bra r 1
OrganismiBrassica campestris (Field mustard)
Taxonomic identifieri3711 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeBrassiceaeBrassica

Pathology & Biotechi

Allergenic propertiesi

Causes an allergic reaction in human. Binds to IgE.

Keywords - Diseasei

Allergen

Protein family/group databases

Allergomei10125. Bra r 5.0101.
171. Bra r 5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7979Polcalcin Bra r 1PRO_0000073668Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi3711.Bra023621.1-P.

Structurei

3D structure databases

ProteinModelPortaliP69197.
SMRiP69197. Positions 4-79.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 3636EF-hand 1PROSITE-ProRule annotationAdd
BLAST
Domaini36 – 7136EF-hand 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 EF-hand domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
KOiK13448.

Family and domain databases

Gene3Di1.10.238.10. 1 hit.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view]
PfamiPF13499. EF-hand_7. 1 hit.
[Graphical view]
SMARTiSM00054. EFh. 2 hits.
[Graphical view]
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiPS00018. EF_HAND_1. 2 hits.
PS50222. EF_HAND_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P69197-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADAEHERIF KKFDTDGDGK ISAAELEEAL KKLGSVTPDD VTRMMAKIDT
60 70
DGDGNISFQE FTEFASANPG LMKDVAKVF
Length:79
Mass (Da):8,644
Last modified:February 15, 2005 - v1
Checksum:i313D4F954521D6B6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D63153 mRNA. Translation: BAA09634.1.
AB032260 Genomic DNA. Translation: BAA93509.1.
PIRiS65151.
RefSeqiXP_009126190.1. XM_009127942.1.
UniGeneiBra.15546.

Genome annotation databases

GeneIDi103851111.
KEGGibrp:103851111.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D63153 mRNA. Translation: BAA09634.1.
AB032260 Genomic DNA. Translation: BAA93509.1.
PIRiS65151.
RefSeqiXP_009126190.1. XM_009127942.1.
UniGeneiBra.15546.

3D structure databases

ProteinModelPortaliP69197.
SMRiP69197. Positions 4-79.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3711.Bra023621.1-P.

Protein family/group databases

Allergomei10125. Bra r 5.0101.
171. Bra r 5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi103851111.
KEGGibrp:103851111.

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
KOiK13448.

Family and domain databases

Gene3Di1.10.238.10. 1 hit.
InterProiIPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
[Graphical view]
PfamiPF13499. EF-hand_7. 1 hit.
[Graphical view]
SMARTiSM00054. EFh. 2 hits.
[Graphical view]
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiPS00018. EF_HAND_1. 2 hits.
PS50222. EF_HAND_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A cDNA clone encoding an IgE-binding protein from Brassica anther has significant sequence similarity to Ca(2+)-binding proteins."
    Toriyama K., Okada T., Watanabe M., Ide T., Ashida T., Xu H., Singh M.
    Plant Mol. Biol. 29:1157-1165(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. S9.
    Tissue: Pollen.
  2. "Expression of Bra r 1 gene in transgenic tobacco and Bra r 1 promoter activity in pollen of various plant species."
    Okada T., Sasaki Y., Ohta R., Onozuka N., Toriyama K.
    Plant Cell Physiol. 41:757-766(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiPOLC1_BRACM
AccessioniPrimary (citable) accession number: P69197
Secondary accession number(s): Q42470
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 15, 2005
Last sequence update: February 15, 2005
Last modified: May 11, 2016
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. Allergens
    Nomenclature of allergens and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.