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Protein

Polcalcin Bra r 1

Gene
N/A
Organism
Brassica campestris (Field mustard)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Calcium bindingi14 – 251PROSITE-ProRule annotationAdd BLAST12
Calcium bindingi49 – 602PROSITE-ProRule annotationAdd BLAST12

GO - Molecular functioni

Keywordsi

LigandCalcium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Polcalcin Bra r 1
Alternative name(s):
Calcium-binding pollen allergen Bra r 1
Allergen: Bra r 1
OrganismiBrassica campestris (Field mustard)
Taxonomic identifieri3711 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeBrassiceaeBrassica

Pathology & Biotechi

Allergenic propertiesi

Causes an allergic reaction in human. Binds to IgE.

Keywords - Diseasei

Allergen

Protein family/group databases

Allergomei10125. Bra r 5.0101.
171. Bra r 5.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000736681 – 79Polcalcin Bra r 1Add BLAST79

Interactioni

Protein-protein interaction databases

STRINGi3711.Bra023621.1-P.

Structurei

3D structure databases

ProteinModelPortaliP69197.
SMRiP69197.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 36EF-hand 1PROSITE-ProRule annotationAdd BLAST36
Domaini36 – 71EF-hand 2PROSITE-ProRule annotationAdd BLAST36

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
KOiK13448.

Family and domain databases

CDDicd00051. EFh. 1 hit.
Gene3Di1.10.238.10. 2 hits.
InterProiView protein in InterPro
IPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
PfamiView protein in Pfam
PF13499. EF-hand_7. 1 hit.
SMARTiView protein in SMART
SM00054. EFh. 2 hits.
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiView protein in PROSITE
PS00018. EF_HAND_1. 2 hits.
PS50222. EF_HAND_2. 2 hits.

Sequencei

Sequence statusi: Complete.

P69197-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADAEHERIF KKFDTDGDGK ISAAELEEAL KKLGSVTPDD VTRMMAKIDT
60 70
DGDGNISFQE FTEFASANPG LMKDVAKVF
Length:79
Mass (Da):8,644
Last modified:February 15, 2005 - v1
Checksum:i313D4F954521D6B6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D63153 mRNA. Translation: BAA09634.1.
AB032260 Genomic DNA. Translation: BAA93509.1.
PIRiS65151.
RefSeqiXP_009126190.1. XM_009127942.2.
UniGeneiBra.15546.

Genome annotation databases

GeneIDi103851111.
KEGGibrp:103851111.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D63153 mRNA. Translation: BAA09634.1.
AB032260 Genomic DNA. Translation: BAA93509.1.
PIRiS65151.
RefSeqiXP_009126190.1. XM_009127942.2.
UniGeneiBra.15546.

3D structure databases

ProteinModelPortaliP69197.
SMRiP69197.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3711.Bra023621.1-P.

Protein family/group databases

Allergomei10125. Bra r 5.0101.
171. Bra r 5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi103851111.
KEGGibrp:103851111.

Phylogenomic databases

eggNOGiKOG0027. Eukaryota.
COG5126. LUCA.
KOiK13448.

Family and domain databases

CDDicd00051. EFh. 1 hit.
Gene3Di1.10.238.10. 2 hits.
InterProiView protein in InterPro
IPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
PfamiView protein in Pfam
PF13499. EF-hand_7. 1 hit.
SMARTiView protein in SMART
SM00054. EFh. 2 hits.
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiView protein in PROSITE
PS00018. EF_HAND_1. 2 hits.
PS50222. EF_HAND_2. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiPOLC1_BRACM
AccessioniPrimary (citable) accession number: P69197
Secondary accession number(s): Q42470
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 15, 2005
Last sequence update: February 15, 2005
Last modified: April 12, 2017
This is version 54 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. Allergens
    Nomenclature of allergens and list of entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.