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Protein

Uncharacterized protein YbcO

Gene

ybcO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6305-MONOMER.
ECOL316407:JW0537-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbcO
Gene namesi
Name:ybcO
Ordered Locus Names:b0549, JW0537
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13631. ybcO.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686541 – 96Uncharacterized protein YbcOAdd BLAST96

Proteomic databases

PaxDbiP68661.
PRIDEiP68661.

Interactioni

Protein-protein interaction databases

BioGridi4261524. 160 interactors.
IntActiP68661. 1 interactor.
STRINGi511145.b0549.

Structurei

Secondary structure

196
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni7 – 10Combined sources4
Turni18 – 20Combined sources3
Helixi25 – 27Combined sources3
Beta strandi29 – 32Combined sources4
Beta strandi47 – 53Combined sources7
Helixi55 – 61Combined sources7
Helixi70 – 90Combined sources21

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3G27X-ray2.10A1-96[»]
ProteinModelPortaliP68661.
SMRiP68661.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP68661.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105RWQ. Bacteria.
ENOG4111WGW. LUCA.
HOGENOMiHOG000122769.
OMAiTIACSSC.

Family and domain databases

InterProiIPR010774. DUF1364.
[Graphical view]
PfamiPF07102. DUF1364. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P68661-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADLRKAARG RECQVRIPGV CNGNPETSVL AHIRLTGLCG TGTKPPDLIA
60 70 80 90
TIACSACHDE IDRRTHFVDA GYAKECALEG MARTQVIWLK EGVIKA
Length:96
Mass (Da):10,348
Last modified:December 7, 2004 - v1
Checksum:iAB066A8AE7B273C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92587 Genomic DNA. Translation: CAA63320.1.
U82598 Genomic DNA. Translation: AAB40745.1.
U00096 Genomic DNA. Translation: AAC73650.1.
AP009048 Genomic DNA. Translation: BAE76324.1.
PIRiC64787.
RefSeqiNP_415081.1. NC_000913.3.
WP_000774486.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73650; AAC73650; b0549.
BAE76324; BAE76324; BAE76324.
GeneIDi945147.
KEGGiecj:JW0537.
eco:b0549.
PATRICi32116260. VBIEscCol129921_0570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X92587 Genomic DNA. Translation: CAA63320.1.
U82598 Genomic DNA. Translation: AAB40745.1.
U00096 Genomic DNA. Translation: AAC73650.1.
AP009048 Genomic DNA. Translation: BAE76324.1.
PIRiC64787.
RefSeqiNP_415081.1. NC_000913.3.
WP_000774486.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3G27X-ray2.10A1-96[»]
ProteinModelPortaliP68661.
SMRiP68661.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261524. 160 interactors.
IntActiP68661. 1 interactor.
STRINGi511145.b0549.

Proteomic databases

PaxDbiP68661.
PRIDEiP68661.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73650; AAC73650; b0549.
BAE76324; BAE76324; BAE76324.
GeneIDi945147.
KEGGiecj:JW0537.
eco:b0549.
PATRICi32116260. VBIEscCol129921_0570.

Organism-specific databases

EchoBASEiEB3396.
EcoGeneiEG13631. ybcO.

Phylogenomic databases

eggNOGiENOG4105RWQ. Bacteria.
ENOG4111WGW. LUCA.
HOGENOMiHOG000122769.
OMAiTIACSSC.

Enzyme and pathway databases

BioCyciEcoCyc:G6305-MONOMER.
ECOL316407:JW0537-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP68661.
PROiP68661.

Family and domain databases

InterProiIPR010774. DUF1364.
[Graphical view]
PfamiPF07102. DUF1364. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBCO_ECOLI
AccessioniPrimary (citable) accession number: P68661
Secondary accession number(s): Q2MBN2, Q37872, Q47271
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 7, 2004
Last sequence update: December 7, 2004
Last modified: November 2, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.