P68661 (YBCO_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
82 prophage-derived uncharacterized protein ybcO

Gene names

Name:	ybcO
Ordered Locus Names:	b0549, JW0537

Organism

Escherichia coli (strain K12)

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	96 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 96

96

82 prophage-derived uncharacterized protein ybcO

PRO_0000168654

Secondary structure

1

.

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.

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.

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.

.

.

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96

Helix Strand Turn

Details...

Helix

25 – 27

3

Beta strand

29 – 32

4

Beta strand

47 – 53

7

Helix

55 – 61

7

Helix

73 – 78

6

Helix

82 – 90

9

Sequences

	Sequence		Length	Mass (Da)
	P68661 [UniParc]. Last modified December 7, 2004. Version 1. Checksum: AB066A8AE7B273C7	FASTA	96	10,348
	10 20 30 40 50 60 MADLRKAARG RECQVRIPGV CNGNPETSVL AHIRLTGLCG TGTKPPDLIA TIACSACHDE 70 80 90 IDRRTHFVDA GYAKECALEG MARTQVIWLK EGVIKA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82." Mahdi A.A., Sharples G.J., Mandal T.N., Lloyd R.G. J. Mol. Biol. 257:561-573(1996) [PubMed: 8648624] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"Sequence of minutes 4-25 of Escherichia coli." Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W. Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[4]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

X92587 Genomic DNA. Translation: CAA63320.1.
U82598 Genomic DNA. Translation: AAB40745.1.
U00096 Genomic DNA. Translation: AAC73650.1.
AP009048 Genomic DNA. Translation: BAE76324.1.

PIR

C64787.

RefSeq

NP_415081.1. NC_000913.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3G27	X-ray	2.10	A	1-96	[»]

ProteinModelPortal

P68661.

SMR

P68661. Positions 5-94.

ModBase

Search...

Protein-protein interaction databases

IntAct

P68661. 1 interaction.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EBESCT00000001902; EBESCP00000001902; EBESCG00000001562.
EBESCT00000014883; EBESCP00000014174; EBESCG00000013943.

GeneID

945147.

GenomeReviews

Gene locus JW0537 in contig AP009048_GR.
Gene locus b0549 in contig U00096_GR.

KEGG

ecj:JW0537.
eco:b0549.

PATRIC

32116260. VBIEscCol129921_0570.

Organism-specific databases

EchoBASE

EB3396.

EcoGene

EG13631. ybcO.

Phylogenomic databases

eggNOG

NOG12259.

GeneTree

EBGT00050000010413.

HOGENOM

HBG297047.

OMA

AEYAKEC.

ProtClustDB

CLSK881205.

Enzyme and pathway databases

BioCyc

EcoCyc:G6305-MONOMER.

Gene expression databases

Genevestigator

P68661.

Family and domain databases

InterPro

IPR010774. DUF1364.
[Graphical view]

Pfam

PF07102. DUF1364. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

YBCO_ECOLI

Accession

Primary (citable) accession number: P68661
Secondary accession number(s): Q2MBN2, Q37872, Q47271

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 7, 2004
Last sequence update:	December 7, 2004
Last modified:	January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program