Reviewed, UniProtKB/Swiss-Prot P68661 (YBCO_ECOLI)

Names and origin

Protein names

Recommended name:
    82 prophage-derived uncharacterized protein ybcO

Gene names

Name:	ybcO
Ordered Locus Names:	b0549, JW0537

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	96 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
nadE	P18843	1	EBI-1118655,EBI-548960

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 96	96	82 prophage-derived uncharacterized protein ybcO		PRO_0000168654

Sequences

	Sequence		Length	Mass (Da)
	P68661-1 [UniParc]. Last modified December 7, 2004. Version 1. Checksum: AB066A8AE7B273C7	FASTA	96	10,348
	10 20 30 40 50 60 MADLRKAARG RECQVRIPGV CNGNPETSVL AHIRLTGLCG TGTKPPDLIA TIACSACHDE 70 80 90 IDRRTHFVDA GYAKECALEG MARTQVIWLK EGVIKA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82." Mahdi A.A., Sharples G.J., Mandal T.N., Lloyd R.G. J. Mol. Biol. 257:561-573(1996) [PubMed: 8648624] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"Sequence of minutes 4-25 of Escherichia coli." Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W. Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[4]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases

EMBLGenBankDDBJ

X92587 Genomic DNA. Translation: CAA63320.1.
U82598 Genomic DNA. Translation: AAB40745.1.
U00096 Genomic DNA. Translation: AAC73650.1.
AP009048 Genomic DNA. Translation: BAE76324.1.

PIR

C64787.

RefSeq

AP_001194.1.
NP_415081.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3G27	X-ray	2.10	A	1-96	[»]

ModBase

Search...

Protein-protein interaction databases

IntAct

P68661. 1 interaction.

Genome annotation databases

GeneID

945147.

GenomeReviews

Gene locus JW0537 in contig AP009048_GR.
Gene locus b0549 in contig U00096_GR.

KEGG

ecj:JW0537.
eco:b0549.

Organism-specific databases

EchoBASE

EB3396.

EcoGene

EG13631. ybcO.

CMR

Search...

Phylogenomic databases

HOGENOM

P68661.

OMA

P68661. SACHDEV.

Enzyme and pathway databases

BioCyc

EcoCyc:G6305-MON.

Family and domain databases

InterPro

IPR010774. DUF1364.
[Graphical view]

Pfam

PF07102. DUF1364. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

YBCO_ECOLI

Accession

Primary (citable) accession number: P68661
Secondary accession number(s): Q2MBN2, Q37872, Q47271

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 7, 2004
Last sequence update:	December 7, 2004
Last modified:	June 16, 2009
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)