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Protein

Nucleoprotein

Gene

pc3

Organism
Rice stripe virus (isolate M) (RSV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Encapsidates the genome, protecting it from nucleases. The encapsidated genomic RNA is termed the nucleocapsid (NC), and serves as template for viral transcription and replication (By similarity).By similarity

GO - Molecular functioni

Keywordsi

Molecular functionRNA-binding, Viral nucleoprotein

Names & Taxonomyi

Protein namesi
Recommended name:
Nucleoprotein
Alternative name(s):
Coat protein
Short name:
CP
Nucleocapsid protein
Short name:
Protein N
Protein pc3
Gene namesi
ORF Names:pc3
OrganismiRice stripe virus (isolate M) (RSV)
Taxonomic identifieri36393 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA negative-strand virusesBunyaviralesPhenuiviridaeTenuivirus
Virus hostiAvena sativa (Oat) [TaxID: 4498]
Digitaria [TaxID: 66017]
Eragrostis [TaxID: 38413]
Hordeum vulgare (Barley) [TaxID: 4513]
Oryza sativa (Rice) [TaxID: 4530]
Setaria italica (Foxtail millet) (Panicum italicum) [TaxID: 4555]
Setaria viridis (Green bristlegrass) (Setaria italica subsp. viridis) [TaxID: 4556]
Triticum aestivum (Wheat) [TaxID: 4565]
Zea mays (Maize) [TaxID: 4577]

Subcellular locationi

P68560:

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Host cytoplasm, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002225211 – 322NucleoproteinAdd BLAST322

Structurei

3D structure databases

ProteinModelPortaliP68560.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni201 – 322RNA-bindingBy similarityAdd BLAST122

Sequence similaritiesi

Family and domain databases

InterProiView protein in InterPro
IPR009522. Capsid_Phlebovir/Tenuivir.
IPR008864. Nucleocapsid_Tenuivirus.
PfamiView protein in Pfam
PF05733. Tenui_N. 1 hit.
PIRSFiPIRSF004108. Tenuivirus_N. 1 hit.

Sequencei

Sequence statusi: Complete.

P68560-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGTNKPATLA DLQKAINDIS KDALSYLTAH KADVVTFAGQ IEYAGYDAAT
60 70 80 90 100
LIGILKDKGG DTLAKDMTMC ITMRYVRGTG FVRDVTKKVK VAAGSTEAST
110 120 130 140 150
LVSRYGIVSS VGTNANAITL GRLAQLFPNV SHEVVRQISG VKMAVDSSDL
160 170 180 190 200
GLTGCDNLLW DYVPQYIKLE SETAPYCSTH SLSHILFVVH IIHSFQITKK
210 220 230 240 250
TMPEGKKKER GLTKDIDMMK YTTGLLVITC KSKNLSDKKK EEGRKKVLDE
260 270 280 290 300
FITNGKVKTT IFDALAGMSV NTISTYGNQT RLYLAQQSKL MKILAENTSK
310 320
TATEVSGLVK EFFEDEAEGA DD
Length:322
Mass (Da):35,134
Last modified:December 7, 2004 - v2
Checksum:i4F56E88818C9D98B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D01094 Genomic RNA. Translation: BAA00879.1.
RefSeqiNP_620548.1. NC_003776.1.

Genome annotation databases

GeneIDi962687.
KEGGivg:962687.

Similar proteinsi

Entry informationi

Entry nameiNCAP_RSVM
AccessioniPrimary (citable) accession number: P68560
Secondary accession number(s): P26657
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 23, 2004
Last sequence update: December 7, 2004
Last modified: June 7, 2017
This is version 44 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Direct protein sequencing

Documents

  1. SIMILARITY comments
    Index of protein domains and families