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Protein

UPF0337 protein YjbJ

Gene

yjbJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:EG11928-MONOMER.
ECOL316407:JW4005-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0337 protein YjbJ
Gene namesi
Name:yjbJ
Ordered Locus Names:b4045, JW4005
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG11928. yjbJ.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6969UPF0337 protein YjbJPRO_0000209999Add
BLAST

Proteomic databases

EPDiP68206.
PaxDbiP68206.
PRIDEiP68206.

Interactioni

Protein-protein interaction databases

BioGridi4261626. 9 interactions.
DIPiDIP-48052N.
IntActiP68206. 5 interactions.
MINTiMINT-1288760.
STRINGi511145.b4045.

Structurei

Secondary structure

1
69
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi6 – 83Combined sources
Helixi9 – 2012Combined sources
Helixi26 – 327Combined sources
Helixi36 – 4611Combined sources
Helixi51 – 6515Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RYKNMR-A1-69[»]
ProteinModelPortaliP68206.
SMRiP68206. Positions 1-69.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP68206.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0337 (CsbD) family.Curated

Phylogenomic databases

eggNOGiENOG4105VDW. Bacteria.
COG3237. LUCA.
HOGENOMiHOG000283480.
InParanoidiP68206.
OMAiNWDRIEG.
PhylomeDBiP68206.

Family and domain databases

Gene3Di1.10.1470.10. 1 hit.
InterProiIPR008462. CsbD.
IPR026042. YjbJ.
[Graphical view]
PfamiPF05532. CsbD. 1 hit.
[Graphical view]
PIRSFiPIRSF039008. YjbJ. 1 hit.
SUPFAMiSSF69047. SSF69047. 1 hit.

Sequencei

Sequence statusi: Complete.

P68206-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKDEAGGNW KQFKGKVKEQ WGKLTDDDMT IIEGKRDQLV GKIQERYGYQ
60
KDQAEKEVVD WETRNEYRW
Length:69
Mass (Da):8,325
Last modified:October 25, 2004 - v1
Checksum:i9A7B50816959F031
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43139.1.
U00096 Genomic DNA. Translation: AAC77015.1.
AP009048 Genomic DNA. Translation: BAE78047.1.
PIRiD65212.
RefSeqiNP_418469.1. NC_000913.3.
WP_001030593.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC77015; AAC77015; b4045.
BAE78047; BAE78047; BAE78047.
GeneIDi948553.
KEGGiecj:JW4005.
eco:b4045.
PATRICi32123627. VBIEscCol129921_4162.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00006 Genomic DNA. Translation: AAC43139.1.
U00096 Genomic DNA. Translation: AAC77015.1.
AP009048 Genomic DNA. Translation: BAE78047.1.
PIRiD65212.
RefSeqiNP_418469.1. NC_000913.3.
WP_001030593.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RYKNMR-A1-69[»]
ProteinModelPortaliP68206.
SMRiP68206. Positions 1-69.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261626. 9 interactions.
DIPiDIP-48052N.
IntActiP68206. 5 interactions.
MINTiMINT-1288760.
STRINGi511145.b4045.

Proteomic databases

EPDiP68206.
PaxDbiP68206.
PRIDEiP68206.

Protocols and materials databases

DNASUi948553.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC77015; AAC77015; b4045.
BAE78047; BAE78047; BAE78047.
GeneIDi948553.
KEGGiecj:JW4005.
eco:b4045.
PATRICi32123627. VBIEscCol129921_4162.

Organism-specific databases

EchoBASEiEB1872.
EcoGeneiEG11928. yjbJ.

Phylogenomic databases

eggNOGiENOG4105VDW. Bacteria.
COG3237. LUCA.
HOGENOMiHOG000283480.
InParanoidiP68206.
OMAiNWDRIEG.
PhylomeDBiP68206.

Enzyme and pathway databases

BioCyciEcoCyc:EG11928-MONOMER.
ECOL316407:JW4005-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP68206.
PROiP68206.

Family and domain databases

Gene3Di1.10.1470.10. 1 hit.
InterProiIPR008462. CsbD.
IPR026042. YjbJ.
[Graphical view]
PfamiPF05532. CsbD. 1 hit.
[Graphical view]
PIRSFiPIRSF039008. YjbJ. 1 hit.
SUPFAMiSSF69047. SSF69047. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYJBJ_ECOLI
AccessioniPrimary (citable) accession number: P68206
Secondary accession number(s): P32691, Q2M6Q9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 25, 2004
Last sequence update: October 25, 2004
Last modified: September 7, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.