UPF0337 protein yjbJ - Escherichia coli (strain K12)

Contribute

Reviewed, UniProtKB/Swiss-Prot P68206 (YJBJ_ECOLI)

Last modified November 4, 2008. Version 43. History...

Clusters with 100%, 90%, 50% identity |

Documents (4) |

Third-party data |

Customize display

text xml rdf/xml gff fasta

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
UPF0337 protein yjbJ

Gene names

Name:	yjbJ
Ordered Locus Names:	b4045, JW4005

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	69 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the UPF0337 (csbD) family.

Ontologies

Keywords
Technical term	3D-structure Complete proteome Direct protein sequencing
Gene Ontology (GO)
Molecular function	protein binding Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
nadE	P18843	1	EBI-549456,EBI-548960

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

69

UPF0337 protein yjbJ

PRO_0000209999

Secondary structure

1

.

.

.

.

.

.

.

.

.

.

69

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P68206-1 [UniParc].

Last modified October 25, 2004. Version 1.
Checksum: 9A7B50816959F031
Show »

69

8,325

        10         20         30         40         50         60 
MNKDEAGGNW KQFKGKVKEQ WGKLTDDDMT IIEGKRDQLV GKIQERYGYQ KDQAEKEVVD 


WETRNEYRW

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes." Blattner F.R., Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L. Nucleic Acids Res. 21:5408-5417(1993) [PubMed: 8265357] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]	"Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12." Link A.J., Robison K., Church G.M. Electrophoresis 18:1259-1313(1997) [PubMed: 9298646] [Abstract] Cited for: PROTEIN SEQUENCE OF 1-12. Strain: K12 / EMG2.
[5]	"Small genes/gene-products in Escherichia coli K-12." Wasinger V.C., Humphery-Smith I. FEMS Microbiol. Lett. 169:375-382(1998) [PubMed: 9868784] [Abstract] Cited for: PROTEIN SEQUENCE OF 1-10. Strain: K12.
[6]	"NMR structure of the hypothetical protein encoded by the YjbJ gene from Escherichia coli." Pineda-Lucena A., Liao J., Wu B., Yee A., Cort J.R., Kennedy M.A., Edwards A.M., Arrowsmith C.H. Proteins 47:572-574(2002) [PubMed: 12001238] [Abstract] Cited for: STRUCTURE BY NMR.

Cross-references

Sequence databases

U00006 Genomic DNA. Translation: AAC43139.1.
U00096 Genomic DNA. Translation: AAC77015.1.
AP009048 Genomic DNA. Translation: BAE78047.1.

PIR

RefSeq

AP_004546.1.
NP_418469.1.

3D structure databases

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1RYK	NMR	-	A	1-69	[»]

ModBase

Protein-protein interaction databases

IntAct

Genome annotation databases

GeneID

GenomeReviews

Gene locus b4045 in contig U00096_GR.
Gene locus JW4005 in contig AP009048_GR.

KEGG

ecj:JW4005.
eco:b4045.

Organism-specific databases

EchoBASE

EcoGene

EG11928. yjbJ.

CMR

Phylogenomic databases

HOGENOM

Enzyme and pathway databases

BioCyc

EcoCyc:EG11928-MON.

Family and domain databases

InterPro

IPR008462. CsbD.
[Graphical view]

Pfam

PF05532. CsbD. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

YJBJ_ECOLI

Accession

Primary (citable) accession number: P68206
Secondary accession number(s): P32691, Q2M6Q9

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 25, 2004
Last sequence update:	October 25, 2004
Last modified:	November 4, 2008
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents