P68206 (YJBJ_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0337 protein yjbJ

Gene names

Name:	yjbJ
Ordered Locus Names:	b4045, JW4005

Organism

Escherichia coli (strain K12)

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	69 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the UPF0337 (CsbD) family.

Ontologies

Keywords
Technical term	3D-structure Complete proteome Direct protein sequencing Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Binary interactions

With	Entry	#Exp.	IntAct	Notes
nadE	P18843	1	EBI-549456,EBI-548960

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 69

69

UPF0337 protein yjbJ

PRO_0000209999

Secondary structure

1

.

.

.

.

.

.

.

.

.

.

69

Helix Strand Turn

Details...

Beta strand

6 – 8

3

Helix

9 – 20

12

Helix

26 – 32

7

Helix

36 – 46

11

Helix

51 – 65

15

Sequences

	Sequence		Length	Mass (Da)
	P68206 [UniParc]. Last modified October 25, 2004. Version 1. Checksum: 9A7B50816959F031	FASTA	69	8,325
	10 20 30 40 50 60 MNKDEAGGNW KQFKGKVKEQ WGKLTDDDMT IIEGKRDQLV GKIQERYGYQ KDQAEKEVVD WETRNEYRW

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes." Blattner F.R., Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L. Nucleic Acids Res. 21:5408-5417(1993) [PubMed: 8265357] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[4]	"Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12." Link A.J., Robison K., Church G.M. Electrophoresis 18:1259-1313(1997) [PubMed: 9298646] [Abstract] Cited for: PROTEIN SEQUENCE OF 1-12. Strain: K12 / EMG2.
[5]	"Small genes/gene-products in Escherichia coli K-12." Wasinger V.C., Humphery-Smith I. FEMS Microbiol. Lett. 169:375-382(1998) [PubMed: 9868784] [Abstract] Cited for: PROTEIN SEQUENCE OF 1-10. Strain: K12.
[6]	"NMR structure of the hypothetical protein encoded by the YjbJ gene from Escherichia coli." Pineda-Lucena A., Liao J., Wu B., Yee A., Cort J.R., Kennedy M.A., Edwards A.M., Arrowsmith C.H. Proteins 47:572-574(2002) [PubMed: 12001238] [Abstract] Cited for: STRUCTURE BY NMR.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

U00006 Genomic DNA. Translation: AAC43139.1.
U00096 Genomic DNA. Translation: AAC77015.1.
AP009048 Genomic DNA. Translation: BAE78047.1.

PIR

D65212.

RefSeq

NP_418469.1. NC_000913.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1RYK	NMR	-	A	1-69	[»]

ProteinModelPortal

P68206.

SMR

P68206. Positions 1-69.

ModBase

Search...

Protein-protein interaction databases

DIP

DIP-48052N.

IntAct

P68206. 4 interactions.

MINT

MINT-1288760.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EBESCT00000003745; EBESCP00000003745; EBESCG00000003063.
EBESCT00000016821; EBESCP00000016112; EBESCG00000015880.

GeneID

948553.

GenomeReviews

Gene locus JW4005 in contig AP009048_GR.
Gene locus b4045 in contig U00096_GR.

KEGG

ecj:JW4005.
eco:b4045.

PATRIC

32123627. VBIEscCol129921_4162.

Organism-specific databases

EchoBASE

EB1872.

EcoGene

EG11928. yjbJ.

Phylogenomic databases

eggNOG

COG3237.

GeneTree

EBGT00050000011546.

HOGENOM

HBG704474.

OMA

ERYGYEK.

PhylomeDB

P68206.

ProtClustDB

PRK10428.

Enzyme and pathway databases

BioCyc

EcoCyc:EG11928-MONOMER.

Gene expression databases

Genevestigator

P68206.

Family and domain databases

InterPro

IPR008462. CsbD.
[Graphical view]

Gene3D

G3DSA:1.10.1470.10. CsbD. 1 hit.

Pfam

PF05532. CsbD. 1 hit.
[Graphical view]

SUPFAM

SSF69047. CsbD. 1 hit.

ProtoNet

Search...

Entry information

Entry name

YJBJ_ECOLI

Accession

Primary (citable) accession number: P68206
Secondary accession number(s): P32691, Q2M6Q9

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 25, 2004
Last sequence update:	October 25, 2004
Last modified:	January 25, 2012
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program