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Protein

Cellular tumor antigen p53

Gene

TP53

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression. In cooperation with mitochondrial PPIF is involved in activating oxidative stress-induced necrosis; the function is largely independent of transcription. Prevents CDK7 kinase activity when associated to CAK complex in response to DNA damage, thus stopping cell cycle progression. Induces the transcription of long intergenic non-coding RNA p21 (lincRNA-p21) and lincRNA-Mkln1. LincRNA-p21 participates in TP53-dependent transcriptional repression leading to apoptosis and seem to have to effect on cell-cycle regulation. Regulates the circadian clock by repressing CLOCK-ARNTL/BMAL1-mediated transcriptional activation of PER2.By similarity

Cofactori

Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi168 – 1681ZincBy similarity
Metal bindingi171 – 1711ZincBy similarity
Metal bindingi231 – 2311ZincBy similarity
Metal bindingi235 – 2351ZincBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi94 – 285192By similarityAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator, Repressor

Keywords - Biological processi

Apoptosis, Biological rhythms, Cell cycle, Necrosis, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-BTA-2559580. Oxidative Stress Induced Senescence.
R-BTA-2559584. Formation of Senescence-Associated Heterochromatin Foci (SAHF).
R-BTA-2559585. Oncogene Induced Senescence.
R-BTA-2559586. DNA Damage/Telomere Stress Induced Senescence.
R-BTA-3232118. SUMOylation of transcription factors.
R-BTA-349425. Autodegradation of the E3 ubiquitin ligase COP1.
R-BTA-5693565. Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks.
R-BTA-6804754. Regulation of TP53 Expression.
R-BTA-6804756. Regulation of TP53 Activity through Phosphorylation.
R-BTA-6804757. Regulation of TP53 Degradation.
R-BTA-6804758. Regulation of TP53 Activity through Acetylation.
R-BTA-6804759. Regulation of TP53 Activity through Association with Co-factors.
R-BTA-6804760. Regulation of TP53 Activity through Methylation.
R-BTA-69473. G2/M DNA damage checkpoint.
R-BTA-69481. G2/M Checkpoints.
R-BTA-69541. Stabilization of p53.
R-BTA-69895. Transcriptional activation of cell cycle inhibitor p21.
R-BTA-8852276. The role of GTSE1 in G2/M progression after G2 checkpoint.

Names & Taxonomyi

Protein namesi
Recommended name:
Cellular tumor antigen p53
Alternative name(s):
Tumor suppressor p53
Gene namesi
Name:TP53
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 19

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Endoplasmic reticulum, Mitochondrion, Nucleus

Pathology & Biotechi

Involvement in diseasei

p53 is found in increased amounts in a wide variety of transformed cells. p53 is frequently mutated or inactivated in many types of cancer.

Keywords - Diseasei

Tumor suppressor

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 386386Cellular tumor antigen p53PRO_0000185694Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei15 – 151Phosphoserine; by CDK5, PRPK, AMPK, NUAK1 and ATMBy similarity
Modified residuei18 – 181Phosphothreonine; by CK1, VRK1 and VRK2By similarity
Modified residuei20 – 201Phosphoserine; by CHEK2, CK1 and PLK3By similarity
Modified residuei33 – 331Phosphoserine; by CDK5 and CDK7By similarity
Modified residuei37 – 371Phosphoserine; by MAPKAPK5By similarity
Modified residuei112 – 1121N6-acetyllysine; by KAT6ABy similarity
Modified residuei175 – 1751Phosphoserine; by AURKBBy similarity
Modified residuei262 – 2621Phosphoserine; by AURKBBy similarity
Modified residuei277 – 2771Phosphothreonine; by AURKBBy similarity
Cross-linki284 – 284Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Cross-linki285 – 285Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Modified residuei298 – 2981N6-acetyllysineBy similarity
Modified residuei308 – 3081Phosphoserine; by AURKA, CDK1 and CDK2By similarity
Modified residuei314 – 3141N6-acetyllysineBy similarity
Modified residuei363 – 3631N6,N6-dimethyllysine; alternateBy similarity
Modified residuei363 – 3631N6-methyllysine; by SMYD2; alternateBy similarity
Modified residuei365 – 3651N6-methyllysine; by SETD7By similarity
Modified residuei366 – 3661N6,N6-dimethyllysine; by EHMT1 and EHMT2; alternateBy similarity
Modified residuei366 – 3661N6-acetyllysine; alternateBy similarity
Modified residuei374 – 3741N6-acetyllysineBy similarity
Modified residuei375 – 3751N6,N6-dimethyllysine; alternateBy similarity
Modified residuei375 – 3751N6-acetyllysine; by KAT6A; alternateBy similarity
Modified residuei375 – 3751N6-methyllysine; by KMT5A; alternateBy similarity
Cross-linki379 – 379Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO)By similarity
Modified residuei385 – 3851Phosphoserine; by CK2, CDK2 and NUAK1By similarity

Post-translational modificationi

Phosphorylation on Ser residues mediates transcriptional activation. Phosphorylated on Thr-18 by VRK1, which may prevent the interaction with MDM2. Phosphorylated on Ser-20 by CHEK2 in response to DNA damage, which prevents ubiquitination by MDM2. Phosphorylated on Ser-20 by PLK3 in response to reactive oxygen species (ROS), promoting p53/TP53-mediated apoptosis. Phosphorylated on Ser-33 by CDK7 in a CAK complex in response to DNA damage. Phosphorylated by HIPK1. Phosphorylated on Ser-385 following UV but not gamma irradiation. Phosphorylated on Ser-15 upon ultraviolet irradiation; which is enhanced by interaction with BANP. Stabilized by CDK5-mediated phosphorylation in response to genotoxic and oxidative stresses at Ser-15 and Ser-33, leading to accumulation of p53/TP53, particularly in the nucleus, thus inducing the transactivation of p53/TP53 target genes. Phosphorylated at Ser-308 and Ser-385 by CDK2 in response to DNA-damage (By similarity).By similarity
Acetylated. Its deacetylation by SIRT1 impairs its ability to induce proapoptotic program and modulate cell senescence. Deacetylation by SIRT2 impairs its ability to induce transcription activation in a AKT-dependent manner (By similarity).By similarity
Ubiquitinated by MDM2 and SYVN1, which leads to proteasomal degradation. Ubiquitinated by RFWD3, which works in cooperation with MDM2 and may catalyze the formation of short polyubiquitin chains on p53/TP53 that are not targeted to the proteasome. Ubiquitinated by MKRN1 at Lys-284 and Lys-285, which leads to proteasomal degradation. Deubiquitinated by USP10, leading to stabilize it. Ubiquitinated by TRIM24 and RFFL, which leads to proteasomal degradation. Ubiquitination by TOPORS induces degradation. Deubiquitination by USP7, leading to stabilize it. Ubiquitinated by RFWD2, which leads to proteasomal degradation. Ubiquitination and subsequent proteasomal degradation is negatively regulated by CCAR2 (By similarity).By similarity
Monomethylated at Lys-365 by SETD7, leading to stabilization and increased transcriptional activation. Monomethylated at Lys-363 by SMYD2, leading to decreased DNA-binding activity and subsequent transcriptional regulation activity. Lys-365 monomethylation prevents interaction with SMYD2 and subsequent monomethylation at Lys-363. Dimethylated at Lys-366 by EHMT1 and EHMT2. Monomethylated at Lys-375 by KMT5A, promoting interaction with L3MBTL1 and leading to repress transcriptional activity. Demethylation of dimethylated Lys-363 by KDM1A prevents interaction with TP53BP1 and represses TP53-mediated transcriptional activation (By similarity).By similarity
Sumoylated with SUMO1. Sumoylated at Lys-379 by UBC9 (By similarity).By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiP67939.
PRIDEiP67939.

Expressioni

Gene expression databases

ExpressionAtlasiP67939. baseline.

Interactioni

Subunit structurei

Binds DNA as a homotetramer. Found in a complex with CABLES1 and TP73. Interacts with histone acetyltransferases EP300 and methyltransferases HRMT1L2 and CARM1, and recruits them to promoters. The C-terminus interacts with TAF1, when TAF1 is part of the TFIID complex. Interacts with HIPK1, HIPK2, AXIN1, and TP53INP1. Part of a complex consisting of TP53, HIPK2 and AXIN1. Interacts with WWOX. Interacts with USP7 and SYVN1. Interacts with HSP90AB1. Interacts with ARMD10, BANP, CDKN2AIP, NUAK1, STK11/LKB1, UHRF2 and E4F1. Interacts with CHD8, leading to recruit histone H1 and prevent transactivation activity. Interacts with YWHAZ; the interaction enhances TP53 transcriptional activity. Phosphorylation of YWHAZ on 'Ser-58' inhibits this interaction. Directly interacts with FBXO42; leading to ubiquitination and degradation of TP53. Interacts with AURKA, DAXX, BRD7 and TRIM24. Interacts (when monomethylated at Lys-375) with L3MBTL1. Interacts with GRK5. Binds to the CAK complex (CDK7, cyclin H and MAT1) in response to DNA damage. Interacts with CDK5 in neurons. Interacts with AURKB, SETD2, UHRF2 and NOC2L. Interacts (via N-terminus) with PTK2/FAK1; this promotes ubiquitination by MDM2. Interacts with PTK2B/PYK2; this promotes ubiquitination by MDM2. Interacts with PRKCG. Interacts with PPIF; the association implicates preferentially tetrameric TP53, is induced by oxidative stress and is impaired by cyclosporin A (CsA). Interacts with SNAI1; the interaction induces SNAI1 degradation via MDM2-mediated ubiquitination and inhibits SNAI1-induced cell invasion. Interacts with KAT6A. Interacts with UBC9. Forms a complex with UBC9 and PRKRA. Interacts with ZNF385B; the interaction is direct. Interacts (via DNA-binding domain) with ZNF385A; the interaction is direct and enhances p53/TP53 transactivation functions on cell-cycle arrest target genes, resulting in growth arrest. Interacts with ANKRD2. Interacts with RFFL (via RING-type zinc finger); involved in p53/TP53 ubiquitination. Interacts with MTA1 and RFWD2. Interacts with CCAR2 (via N-terminus). Interacts with MORC3.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei112 – 1121Interaction with DNABy similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000001420.

Structurei

3D structure databases

ProteinModelPortaliP67939.
SMRiP67939. Positions 86-287, 312-353.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 313313Interaction with CCAR2By similarityAdd
BLAST
Regioni1 – 4444Transcription activation (acidic)Add
BLAST
Regioni63 – 10240Interaction with WWOXBy similarityAdd
BLAST
Regioni92 – 363272Interaction with HIPK1By similarityAdd
BLAST
Regioni92 – 293202Required for interaction with ZNF385ABy similarityAdd
BLAST
Regioni105 – 229125Required for interaction with FBXO42By similarityAdd
BLAST
Regioni108 – 285178Interaction with AXIN1By similarityAdd
BLAST
Regioni249 – 28739Interaction with E4F1By similarityAdd
BLAST
Regioni266 – 2738Interaction with DNABy similarity
Regioni312 – 35342Interaction with HIPK2By similarityAdd
BLAST
Regioni318 – 34932OligomerizationAdd
BLAST
Regioni352 – 3565Interaction with USP7By similarity
Regioni361 – 38020Basic (repression of DNA-binding)Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi298 – 31417Bipartite nuclear localization signalBy similarityAdd
BLAST
Motifi332 – 34312Nuclear export signalBy similarityAdd
BLAST
Motifi363 – 3653[KR]-[STA]-K motif

Domaini

The [KR]-[STA]-K motif is specifically recognized by the SETD7 methyltransferase.By similarity

Sequence similaritiesi

Belongs to the p53 family.Curated

Phylogenomic databases

eggNOGiENOG410IITK. Eukaryota.
ENOG410ZSWV. LUCA.
GeneTreeiENSGT00390000015092.
HOGENOMiHOG000039957.
HOVERGENiHBG005201.
InParanoidiP67939.
KOiK04451.
OMAiSQKTYPG.
OrthoDBiEOG7JQBNW.
TreeFamiTF106101.

Family and domain databases

Gene3Di2.60.40.720. 1 hit.
4.10.170.10. 1 hit.
InterProiIPR008967. p53-like_TF_DNA-bd.
IPR012346. p53/RUNT-type_TF_DNA-bd.
IPR011615. p53_DNA-bd.
IPR010991. p53_tetrameristn.
IPR013872. p53_transactivation_domain.
IPR002117. p53_tumour_suppressor.
[Graphical view]
PANTHERiPTHR11447. PTHR11447. 1 hit.
PfamiPF00870. P53. 1 hit.
PF08563. P53_TAD. 1 hit.
PF07710. P53_tetramer. 1 hit.
[Graphical view]
PRINTSiPR00386. P53SUPPRESSR.
SUPFAMiSSF47719. SSF47719. 1 hit.
SSF49417. SSF49417. 1 hit.
PROSITEiPS00348. P53. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P67939-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEESQAELNV EPPLSQETFS DLWNLLPENN LLSSELSAPV DDLLPYTDVA
60 70 80 90 100
TWLDECPNEA PQMPEPSAPA APPPATPAPA TSWPLSSFVP SQKTYPGNYG
110 120 130 140 150
FRLGFLQSGT AKSVTCTYSP SLNKLFCQLA KTCPVQLWVD SPPPPGTRVR
160 170 180 190 200
AMAIYKKLEH MTEVVRRCPH HERSSDYSDG LAPPQHLIRV EGNLRAEYLD
210 220 230 240 250
DRNTFRHSVV VPYESPEIDS ECTTIHYNFM CNSSCMGGMN RRPILTIITL
260 270 280 290 300
EDSCGNLLGR NSFEVRVCAC PGRDRRTEEE NLRKKGQSCP EPPPRSTKRA
310 320 330 340 350
LPTNTSSSPQ PKKKPLDGEY FTLQIRGFKR YEMFRELNDA LELKDALDGR
360 370 380
EPGESRAHSS HLKSKKRPSP SCHKKPMLKR EGPDSD
Length:386
Mass (Da):43,256
Last modified:October 11, 2004 - v1
Checksum:i222473F28C548F31
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti380 – 3801R → T in BAA08629 (PubMed:8807776).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X81704 mRNA. Translation: CAA57348.1.
DQ656490 mRNA. Translation: ABG37911.1.
BC102440 mRNA. Translation: AAI02441.1.
D49825 mRNA. Translation: BAA08629.1.
PIRiS51648.
RefSeqiNP_776626.1. NM_174201.2.
UniGeneiBt.49712.

Genome annotation databases

EnsembliENSBTAT00000001420; ENSBTAP00000001420; ENSBTAG00000001069.
GeneIDi281542.
KEGGibta:281542.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X81704 mRNA. Translation: CAA57348.1.
DQ656490 mRNA. Translation: ABG37911.1.
BC102440 mRNA. Translation: AAI02441.1.
D49825 mRNA. Translation: BAA08629.1.
PIRiS51648.
RefSeqiNP_776626.1. NM_174201.2.
UniGeneiBt.49712.

3D structure databases

ProteinModelPortaliP67939.
SMRiP67939. Positions 86-287, 312-353.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000001420.

Proteomic databases

PaxDbiP67939.
PRIDEiP67939.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000001420; ENSBTAP00000001420; ENSBTAG00000001069.
GeneIDi281542.
KEGGibta:281542.

Organism-specific databases

CTDi7157.

Phylogenomic databases

eggNOGiENOG410IITK. Eukaryota.
ENOG410ZSWV. LUCA.
GeneTreeiENSGT00390000015092.
HOGENOMiHOG000039957.
HOVERGENiHBG005201.
InParanoidiP67939.
KOiK04451.
OMAiSQKTYPG.
OrthoDBiEOG7JQBNW.
TreeFamiTF106101.

Enzyme and pathway databases

ReactomeiR-BTA-2559580. Oxidative Stress Induced Senescence.
R-BTA-2559584. Formation of Senescence-Associated Heterochromatin Foci (SAHF).
R-BTA-2559585. Oncogene Induced Senescence.
R-BTA-2559586. DNA Damage/Telomere Stress Induced Senescence.
R-BTA-3232118. SUMOylation of transcription factors.
R-BTA-349425. Autodegradation of the E3 ubiquitin ligase COP1.
R-BTA-5693565. Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks.
R-BTA-6804754. Regulation of TP53 Expression.
R-BTA-6804756. Regulation of TP53 Activity through Phosphorylation.
R-BTA-6804757. Regulation of TP53 Degradation.
R-BTA-6804758. Regulation of TP53 Activity through Acetylation.
R-BTA-6804759. Regulation of TP53 Activity through Association with Co-factors.
R-BTA-6804760. Regulation of TP53 Activity through Methylation.
R-BTA-69473. G2/M DNA damage checkpoint.
R-BTA-69481. G2/M Checkpoints.
R-BTA-69541. Stabilization of p53.
R-BTA-69895. Transcriptional activation of cell cycle inhibitor p21.
R-BTA-8852276. The role of GTSE1 in G2/M progression after G2 checkpoint.

Gene expression databases

ExpressionAtlasiP67939. baseline.

Family and domain databases

Gene3Di2.60.40.720. 1 hit.
4.10.170.10. 1 hit.
InterProiIPR008967. p53-like_TF_DNA-bd.
IPR012346. p53/RUNT-type_TF_DNA-bd.
IPR011615. p53_DNA-bd.
IPR010991. p53_tetrameristn.
IPR013872. p53_transactivation_domain.
IPR002117. p53_tumour_suppressor.
[Graphical view]
PANTHERiPTHR11447. PTHR11447. 1 hit.
PfamiPF00870. P53. 1 hit.
PF08563. P53_TAD. 1 hit.
PF07710. P53_tetramer. 1 hit.
[Graphical view]
PRINTSiPR00386. P53SUPPRESSR.
SUPFAMiSSF47719. SSF47719. 1 hit.
SSF49417. SSF49417. 1 hit.
PROSITEiPS00348. P53. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of the bovine P53 tumor-suppressor cDNA."
    Dequiedt F., Kettmann R., Burny A., Willems L.
    DNA Seq. 5:261-264(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Liver.
  2. "p53 cDNA sequence of Theileria-transformed cell lines."
    Haller D., Seitzer U., Ahmed J.
    Submitted (MAY-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  3. NIH - Mammalian Gene Collection (MGC) project
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Crossbred X Angus.
    Tissue: Ileum.
  4. "Predominant p53 mutations in enzootic bovine leukemic cell lines."
    Komori H., Ishiguro N., Horiuchi M., Shinagawa M., Aida Y.
    Vet. Immunol. Immunopathol. 52:53-63(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 13-386.
    Strain: Holstein.
    Tissue: Thymus.

Entry informationi

Entry nameiP53_BOVIN
AccessioniPrimary (citable) accession number: P67939
Secondary accession number(s): Q29628, Q3ZCF1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: June 8, 2016
This is version 127 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.