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Protein

Uncharacterized HTH-type transcriptional regulator YddM

Gene

yddM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi24 – 43H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6774-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YddM
Gene namesi
Name:yddM
Ordered Locus Names:b1477, JW5908
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13784 yddM

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001497591 – 94Uncharacterized HTH-type transcriptional regulator YddMAdd BLAST94

Proteomic databases

PaxDbiP67699
PRIDEiP67699

Interactioni

Protein-protein interaction databases

BioGridi4262904, 7 interactors
STRINGi316385.ECDH10B_1608

Structurei

3D structure databases

ProteinModelPortaliP67699
SMRiP67699
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini13 – 67HTH cro/C1-typePROSITE-ProRule annotationAdd BLAST55

Sequence similaritiesi

Belongs to the VapA/VapI family.Curated

Phylogenomic databases

eggNOGiENOG41084S7 Bacteria
COG3093 LUCA
HOGENOMiHOG000265974
KOiK21498
OMAiKMFNPPH
PhylomeDBiP67699

Family and domain databases

CDDicd00093 HTH_XRE, 1 hit
InterProiView protein in InterPro
IPR001387 Cro/C1-type_HTH
IPR010982 Lambda_DNA-bd_dom_sf
IPR013430 Toxin_antidote_HigA
PANTHERiPTHR36924 PTHR36924, 1 hit
PfamiView protein in Pfam
PF01381 HTH_3, 1 hit
SMARTiView protein in SMART
SM00530 HTH_XRE, 1 hit
SUPFAMiSSF47413 SSF47413, 1 hit
TIGRFAMsiTIGR02607 antidote_HigA, 1 hit
PROSITEiView protein in PROSITE
PS50943 HTH_CROC1, 1 hit

Sequencei

Sequence statusi: Complete.

P67699-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKMANHPRPG DIIQESLDEL NVSLREFARA MEIAPSTASR LLTGKAALTP
60 70 80 90
EMAIKLSVVI GSSPQMWLNL QNAWSLAEAE KTVDVSRLRR LVTQ
Length:94
Mass (Da):10,401
Last modified:October 11, 2004 - v1
Checksum:iE330280EDA2AEC1B
GO

Sequence cautioni

The sequence BAE76451 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAD13441.2
AP009048 Genomic DNA Translation: BAE76451.1 Different initiation.
PIRiH64900
RefSeqiNP_415994.4, NC_000913.3
WP_000781370.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAD13441; AAD13441; b1477
BAE76451; BAE76451; BAE76451
GeneIDi946040
KEGGiecj:JW5908
eco:b1477
PATRICifig|1411691.4.peg.790

Similar proteinsi

Entry informationi

Entry nameiYDDM_ECOLI
AccessioniPrimary (citable) accession number: P67699
Secondary accession number(s): P76125, Q2MBA5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: March 28, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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