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Protein

Uncharacterized HTH-type transcriptional regulator YhaJ

Gene

yhaJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi24 – 4320H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7619-MONOMER.
ECOL316407:JW3076-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YhaJ
Gene namesi
Name:yhaJ
Ordered Locus Names:b3105, JW3076
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12749. yhaJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 298298Uncharacterized HTH-type transcriptional regulator YhaJPRO_0000105796Add
BLAST

Proteomic databases

PaxDbiP67660.

Interactioni

Protein-protein interaction databases

BioGridi4259259. 11 interactions.
DIPiDIP-35869N.
IntActiP67660. 13 interactions.
MINTiMINT-1250735.
STRINGi511145.b3105.

Structurei

3D structure databases

ProteinModelPortaliP67660.
SMRiP67660. Positions 7-275.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 6458HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105CWB. Bacteria.
ENOG410XP36. LUCA.
HOGENOMiHOG000181312.
InParanoidiP67660.
OMAiYVHKRSG.
PhylomeDBiP67660.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P67660-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKERALTLE ALRVMDAIDR RGSFAAAADE LGRVPSALSY TMQKLEEELD
60 70 80 90 100
VVLFDRSGHR TKFTNVGRML LERGRVLLEA ADKLTTDAEA LARGWETHLT
110 120 130 140 150
IVTEALVPTP AFFPLIDKLA AKANTQLAII TEVLAGAWER LEQGRADIVI
160 170 180 190 200
APDMHFRSSS EINSRKLYTL MNVYVAAPDH PIHQEPEPLS EVTRVKYRGI
210 220 230 240 250
AVADTARERP VLTVQLLDKQ PRLTVSTIED KRQALLAGLG VATMPYPMVE
260 270 280 290
KDIAEGRLRV VSPESTSEID IIMAWRRDSM GEAKSWCLRE IPKLFNGK
Length:298
Mass (Da):33,256
Last modified:October 11, 2004 - v1
Checksum:i4B6062F8ED8A3293
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57909.1.
U00096 Genomic DNA. Translation: AAC76140.1.
AP009048 Genomic DNA. Translation: BAE77155.1.
PIRiF65099.
RefSeqiNP_417576.1. NC_000913.3.
WP_001041009.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76140; AAC76140; b3105.
BAE77155; BAE77155; BAE77155.
GeneIDi947621.
KEGGiecj:JW3076.
eco:b3105.
PATRICi32121630. VBIEscCol129921_3201.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57909.1.
U00096 Genomic DNA. Translation: AAC76140.1.
AP009048 Genomic DNA. Translation: BAE77155.1.
PIRiF65099.
RefSeqiNP_417576.1. NC_000913.3.
WP_001041009.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP67660.
SMRiP67660. Positions 7-275.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259259. 11 interactions.
DIPiDIP-35869N.
IntActiP67660. 13 interactions.
MINTiMINT-1250735.
STRINGi511145.b3105.

Proteomic databases

PaxDbiP67660.

Protocols and materials databases

DNASUi947621.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76140; AAC76140; b3105.
BAE77155; BAE77155; BAE77155.
GeneIDi947621.
KEGGiecj:JW3076.
eco:b3105.
PATRICi32121630. VBIEscCol129921_3201.

Organism-specific databases

EchoBASEiEB2605.
EcoGeneiEG12749. yhaJ.

Phylogenomic databases

eggNOGiENOG4105CWB. Bacteria.
ENOG410XP36. LUCA.
HOGENOMiHOG000181312.
InParanoidiP67660.
OMAiYVHKRSG.
PhylomeDBiP67660.

Enzyme and pathway databases

BioCyciEcoCyc:G7619-MONOMER.
ECOL316407:JW3076-MONOMER.

Miscellaneous databases

PROiP67660.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYHAJ_ECOLI
AccessioniPrimary (citable) accession number: P67660
Secondary accession number(s): P42623, Q2M9A1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: September 7, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.