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Protein

UPF0267 protein YqfB

Gene

yqfB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7513-MONOMER.
ECOL316407:JW2868-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0267 protein YqfB
Gene namesi
Name:yqfB
Ordered Locus Names:b2900, JW2868
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13078. yqfB.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 103103UPF0267 protein YqfBPRO_0000214600Add
BLAST

Proteomic databases

PaxDbiP67603.
PRIDEiP67603.

Interactioni

Protein-protein interaction databases

BioGridi4263159. 120 interactions.
IntActiP67603. 1 interaction.
STRINGi511145.b2900.

Structurei

Secondary structure

1
103
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi10 – 178Combined sources
Beta strandi22 – 265Combined sources
Helixi28 – 303Combined sources
Beta strandi37 – 437Combined sources
Turni44 – 463Combined sources
Beta strandi47 – 6115Combined sources
Turni64 – 663Combined sources
Helixi69 – 735Combined sources
Helixi78 – 8811Combined sources
Beta strandi95 – 1017Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TE7NMR-A1-103[»]
ProteinModelPortaliP67603.
SMRiP67603. Positions 1-103.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP67603.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0267 family.Curated

Phylogenomic databases

eggNOGiENOG4105N5Z. Bacteria.
COG3097. LUCA.
HOGENOMiHOG000281301.
InParanoidiP67603.
KOiK09900.
OMAiHARQENM.
OrthoDBiEOG60390Z.

Family and domain databases

HAMAPiMF_00684. UPF0267.
InterProiIPR007374. ASCH_domain.
IPR015947. PUA-like_domain.
IPR008314. UCP029143.
[Graphical view]
PfamiPF04266. ASCH. 1 hit.
[Graphical view]
PIRSFiPIRSF029143. UCP029143. 1 hit.
SMARTiSM01022. ASCH. 1 hit.
[Graphical view]
SUPFAMiSSF88697. SSF88697. 1 hit.

Sequencei

Sequence statusi: Complete.

P67603-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQPNDITFFQ RFQDDILAGR KTITIRDESE SHFKTGDVLR VGRFEDDGYF
60 70 80 90 100
CTIEVTATST VTLDTLTEKH AEQENMTLTE LKKVIADIYP GQTQFYVIEF

KCL
Length:103
Mass (Da):11,905
Last modified:October 11, 2004 - v1
Checksum:iBBC4E2AA87D6F2CE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83081.1.
U00096 Genomic DNA. Translation: AAC75938.1.
AP009048 Genomic DNA. Translation: BAE76965.1.
PIRiD65074.
RefSeqiNP_417376.1. NC_000913.3.
WP_001182957.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75938; AAC75938; b2900.
BAE76965; BAE76965; BAE76965.
GeneIDi947380.
KEGGiecj:JW2868.
eco:b2900.
PATRICi32121214. VBIEscCol129921_2995.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83081.1.
U00096 Genomic DNA. Translation: AAC75938.1.
AP009048 Genomic DNA. Translation: BAE76965.1.
PIRiD65074.
RefSeqiNP_417376.1. NC_000913.3.
WP_001182957.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1TE7NMR-A1-103[»]
ProteinModelPortaliP67603.
SMRiP67603. Positions 1-103.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263159. 120 interactions.
IntActiP67603. 1 interaction.
STRINGi511145.b2900.

Proteomic databases

PaxDbiP67603.
PRIDEiP67603.

Protocols and materials databases

DNASUi947380.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75938; AAC75938; b2900.
BAE76965; BAE76965; BAE76965.
GeneIDi947380.
KEGGiecj:JW2868.
eco:b2900.
PATRICi32121214. VBIEscCol129921_2995.

Organism-specific databases

EchoBASEiEB2888.
EcoGeneiEG13078. yqfB.

Phylogenomic databases

eggNOGiENOG4105N5Z. Bacteria.
COG3097. LUCA.
HOGENOMiHOG000281301.
InParanoidiP67603.
KOiK09900.
OMAiHARQENM.
OrthoDBiEOG60390Z.

Enzyme and pathway databases

BioCyciEcoCyc:G7513-MONOMER.
ECOL316407:JW2868-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP67603.
PROiP67603.

Family and domain databases

HAMAPiMF_00684. UPF0267.
InterProiIPR007374. ASCH_domain.
IPR015947. PUA-like_domain.
IPR008314. UCP029143.
[Graphical view]
PfamiPF04266. ASCH. 1 hit.
[Graphical view]
PIRSFiPIRSF029143. UCP029143. 1 hit.
SMARTiSM01022. ASCH. 1 hit.
[Graphical view]
SUPFAMiSSF88697. SSF88697. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "G-matrix Fourier transform NOESY-based protocol for high-quality protein structure determination."
    Shen Y., Atreya H.S., Liu G., Szyperski T.
    J. Am. Chem. Soc. 127:9085-9099(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiYQFB_ECOLI
AccessioniPrimary (citable) accession number: P67603
Secondary accession number(s): Q2M9U1, Q46828
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: April 13, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.