Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0257 lipoprotein YnfC

Gene

ynfC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6843-MONOMER.
ECOL316407:JW5258-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0257 lipoprotein YnfC
Gene namesi
Name:ynfC
Ordered Locus Names:b1585, JW5258
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13841. ynfC.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 16Sequence analysisAdd BLAST16
ChainiPRO_000003626117 – 236UPF0257 lipoprotein YnfCAdd BLAST220

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi17N-palmitoyl cysteineSequence analysis1
Lipidationi17S-diacylglycerol cysteineSequence analysis1

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiP67553.
PRIDEiP67553.

Interactioni

Protein-protein interaction databases

BioGridi4260235. 11 interactors.
IntActiP67553. 8 interactors.
STRINGi511145.b1585.

Structurei

3D structure databases

ProteinModelPortaliP67553.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0257 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105D69. Bacteria.
ENOG410XPJF. LUCA.
HOGENOMiHOG000120796.
OMAiANYYLDA.

Family and domain databases

HAMAPiMF_01065. UPF0257. 1 hit.
InterProiIPR010646. UPF0257.
[Graphical view]
PfamiPF06788. UPF0257. 1 hit.
[Graphical view]
ProDomiPD120112. UPF0257. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P67553-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKYKLLPCLL AIFLTGCDRT EVTLSFTPEM ASFSNEFDFD PLRGPVKDFT
60 70 80 90 100
QTLMDEQGEV TKRVSGTLSE EGCFDSLELL DLENNTVVAL VLDANYYRDA
110 120 130 140 150
ETLEKRVRLQ GKCQLAELPS AGVSWETDDN GFVIKASSKQ MQMEYRYDDQ
160 170 180 190 200
GYPLGKTTKS NDKTLSVSAT PSTDPIKKLD YTAVTLLNNQ RVGNVKQSCE
210 220 230
YDSHANPVDC QLIIVDEGVK PAVERVYTIK NTIDYY
Length:236
Mass (Da):26,507
Last modified:October 11, 2004 - v1
Checksum:iDC2A48777061BD21
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74657.2.
AP009048 Genomic DNA. Translation: BAE76478.1.
PIRiC64914.
RefSeqiNP_416102.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC74657; AAC74657; b1585.
BAE76478; BAE76478; BAE76478.
GeneIDi946131.
KEGGiecj:JW5258.
eco:b1585.
PATRICi32118472. VBIEscCol129921_1656.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74657.2.
AP009048 Genomic DNA. Translation: BAE76478.1.
PIRiC64914.
RefSeqiNP_416102.2. NC_000913.3.

3D structure databases

ProteinModelPortaliP67553.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260235. 11 interactors.
IntActiP67553. 8 interactors.
STRINGi511145.b1585.

Proteomic databases

PaxDbiP67553.
PRIDEiP67553.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74657; AAC74657; b1585.
BAE76478; BAE76478; BAE76478.
GeneIDi946131.
KEGGiecj:JW5258.
eco:b1585.
PATRICi32118472. VBIEscCol129921_1656.

Organism-specific databases

EchoBASEiEB3602.
EcoGeneiEG13841. ynfC.

Phylogenomic databases

eggNOGiENOG4105D69. Bacteria.
ENOG410XPJF. LUCA.
HOGENOMiHOG000120796.
OMAiANYYLDA.

Enzyme and pathway databases

BioCyciEcoCyc:G6843-MONOMER.
ECOL316407:JW5258-MONOMER.

Miscellaneous databases

PROiP67553.

Family and domain databases

HAMAPiMF_01065. UPF0257. 1 hit.
InterProiIPR010646. UPF0257.
[Graphical view]
PfamiPF06788. UPF0257. 1 hit.
[Graphical view]
ProDomiPD120112. UPF0257. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNFC_ECOLI
AccessioniPrimary (citable) accession number: P67553
Secondary accession number(s): P76171, Q2MB78
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.