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Protein

UPF0122 protein SAV1236

Gene

SAV1236

Organism
Staphylococcus aureus (strain Mu50 / ATCC 700699)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

BioCyciSAUR158878:GJJ5-1248-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0122 protein SAV1236UniRule annotation
Gene namesi
Ordered Locus Names:SAV1236
OrganismiStaphylococcus aureus (strain Mu50 / ATCC 700699)
Taxonomic identifieri158878 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000002481 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002118761 – 110UPF0122 protein SAV1236Add BLAST110

Proteomic databases

PaxDbiP67248.

2D gel databases

World-2DPAGEi0002:P67248.

Interactioni

Protein-protein interaction databases

STRINGi158878.SAV1236.

Structurei

Secondary structure

1110
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 19Combined sources14
Helixi20 – 22Combined sources3
Helixi25 – 35Combined sources11
Helixi41 – 47Combined sources7
Helixi52 – 73Combined sources22
Helixi75 – 89Combined sources15
Helixi96 – 109Combined sources14

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XSVX-ray1.70A/B1-110[»]
ProteinModelPortaliP67248.
SMRiP67248.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP67248.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0122 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VBN. Bacteria.
COG2739. LUCA.
KOiK09787.
OMAiLLTEKQM.
PhylomeDBiP67248.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00245. UPF0122. 1 hit.
InterProiView protein in InterPro
IPR013324. RNA_pol_sigma_r3_r4.
IPR007394. UPF0122.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF04297. UPF0122. 1 hit.
SUPFAMiSSF88659. SSF88659. 1 hit.

Sequencei

Sequence statusi: Complete.

P67248-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQNDLVKTL RMNYLFDFYQ SLLTNKQRNY LELFYLEDYS LSEIADTFNV
60 70 80 90 100
SRQAVYDNIR RTGDLVEDYE KKLELYQKFE QRREIYDEMK QHLSNPEQIQ
110
RYIQQLEDLE
Length:110
Mass (Da):13,581
Last modified:October 11, 2004 - v1
Checksum:i1C77E174FF80988E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000017 Genomic DNA. Translation: BAB57398.1.
RefSeqiWP_000531320.1. NC_002758.2.

Genome annotation databases

EnsemblBacteriaiBAB57398; BAB57398; SAV1236.
GeneIDi31213997.
KEGGisav:SAV1236.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiY1236_STAAM
AccessioniPrimary (citable) accession number: P67248
Secondary accession number(s): Q99UN4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: June 7, 2017
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries