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Protein

UPF0122 protein SAV1236

Gene

SAV1236

Organism
Staphylococcus aureus (strain Mu50 / ATCC 700699)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciSAUR158878:GJJ5-1248-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0122 protein SAV1236UniRule annotation
Gene namesi
Ordered Locus Names:SAV1236
OrganismiStaphylococcus aureus (strain Mu50 / ATCC 700699)
Taxonomic identifieri158878 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000002481 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002118761 – 110UPF0122 protein SAV1236Add BLAST110

Proteomic databases

PaxDbiP67248.

2D gel databases

World-2DPAGE0002:P67248.

Interactioni

Protein-protein interaction databases

STRINGi158878.SAV1236.

Structurei

Secondary structure

1110
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 19Combined sources14
Helixi20 – 22Combined sources3
Helixi25 – 35Combined sources11
Helixi41 – 47Combined sources7
Helixi52 – 73Combined sources22
Helixi75 – 89Combined sources15
Helixi96 – 109Combined sources14

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XSVX-ray1.70A/B1-110[»]
ProteinModelPortaliP67248.
SMRiP67248.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP67248.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0122 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VBN. Bacteria.
COG2739. LUCA.
KOiK09787.
OMAiKQRNYMS.
PhylomeDBiP67248.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00245. UPF0122. 1 hit.
InterProiIPR013324. RNA_pol_sigma_r3_r4.
IPR007394. UPF0122.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04297. UPF0122. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.

Sequencei

Sequence statusi: Complete.

P67248-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQNDLVKTL RMNYLFDFYQ SLLTNKQRNY LELFYLEDYS LSEIADTFNV
60 70 80 90 100
SRQAVYDNIR RTGDLVEDYE KKLELYQKFE QRREIYDEMK QHLSNPEQIQ
110
RYIQQLEDLE
Length:110
Mass (Da):13,581
Last modified:October 11, 2004 - v1
Checksum:i1C77E174FF80988E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000017 Genomic DNA. Translation: BAB57398.1.
RefSeqiWP_000531320.1. NC_002758.2.

Genome annotation databases

EnsemblBacteriaiBAB57398; BAB57398; SAV1236.
GeneIDi28381206.
KEGGisav:SAV1236.
PATRICi19563185. VBIStaAur52173_1270.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000017 Genomic DNA. Translation: BAB57398.1.
RefSeqiWP_000531320.1. NC_002758.2.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XSVX-ray1.70A/B1-110[»]
ProteinModelPortaliP67248.
SMRiP67248.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi158878.SAV1236.

2D gel databases

World-2DPAGE0002:P67248.

Proteomic databases

PaxDbiP67248.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB57398; BAB57398; SAV1236.
GeneIDi28381206.
KEGGisav:SAV1236.
PATRICi19563185. VBIStaAur52173_1270.

Phylogenomic databases

eggNOGiENOG4105VBN. Bacteria.
COG2739. LUCA.
KOiK09787.
OMAiKQRNYMS.
PhylomeDBiP67248.

Enzyme and pathway databases

BioCyciSAUR158878:GJJ5-1248-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP67248.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00245. UPF0122. 1 hit.
InterProiIPR013324. RNA_pol_sigma_r3_r4.
IPR007394. UPF0122.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04297. UPF0122. 1 hit.
[Graphical view]
SUPFAMiSSF88659. SSF88659. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY1236_STAAM
AccessioniPrimary (citable) accession number: P67248
Secondary accession number(s): Q99UN4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.