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Protein

UPF0115 protein YfcN

Gene

yfcN

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0115 protein YfcNUniRule annotation
Gene namesi
Name:yfcNUniRule annotation
Ordered Locus Names:STM2386
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001014 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002145591 – 183UPF0115 protein YfcNAdd BLAST183

Proteomic databases

PaxDbiP67246.
PRIDEiP67246.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM2386.

Structurei

3D structure databases

ProteinModelPortaliP67246.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini98 – 173SmrUniRule annotationAdd BLAST76

Sequence similaritiesi

Belongs to the UPF0115 family.UniRule annotation
Contains 1 Smr domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108DG9. Bacteria.
COG2840. LUCA.
HOGENOMiHOG000257487.
OMAiDTITHRP.
PhylomeDBiP67246.

Family and domain databases

HAMAPiMF_01042. UPF0115. 1 hit.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P67246-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKKTSLSEE DQALFRQLMV GTRKIKQDTI VHRPLRKKIT EVPTRRLIQE
60 70 80 90 100
QADASHYFSD EFQPLLNTEG PVKYVREDVS HFELKKMRRG DYSPELFLDL
110 120 130 140 150
HGLTQLQAKQ ELGALIAACR REHIFCACVM HGHGKHILKQ QTPLWLAQHP
160 170 180
HVMAFHQAPK EYGGDAALLV LIEVEEWQPP ELP
Length:183
Mass (Da):21,177
Last modified:October 11, 2004 - v1
Checksum:iAEE861A8A32AABCA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL21287.1.
RefSeqiNP_461328.1. NC_003197.1.
WP_000730794.1. NC_003197.1.

Genome annotation databases

EnsemblBacteriaiAAL21287; AAL21287; STM2386.
GeneIDi1253908.
KEGGistm:STM2386.
PATRICi32383391. VBISalEnt20916_2525.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL21287.1.
RefSeqiNP_461328.1. NC_003197.1.
WP_000730794.1. NC_003197.1.

3D structure databases

ProteinModelPortaliP67246.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM2386.

Proteomic databases

PaxDbiP67246.
PRIDEiP67246.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL21287; AAL21287; STM2386.
GeneIDi1253908.
KEGGistm:STM2386.
PATRICi32383391. VBISalEnt20916_2525.

Phylogenomic databases

eggNOGiENOG4108DG9. Bacteria.
COG2840. LUCA.
HOGENOMiHOG000257487.
OMAiDTITHRP.
PhylomeDBiP67246.

Family and domain databases

HAMAPiMF_01042. UPF0115. 1 hit.
InterProiIPR002625. Smr_dom.
IPR022990. UPF0115.
[Graphical view]
PfamiPF01713. Smr. 1 hit.
[Graphical view]
SMARTiSM00463. SMR. 1 hit.
[Graphical view]
SUPFAMiSSF160443. SSF160443. 1 hit.
PROSITEiPS50828. SMR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYFCN_SALTY
AccessioniPrimary (citable) accession number: P67246
Secondary accession number(s): Q8XFE8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.