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Protein

UPF0114 protein YqhA

Gene

yqhA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7559-MONOMER.
ECOL316407:JW2971-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0114 protein YqhA
Gene namesi
Name:yqhA
Ordered Locus Names:b3002, JW2971
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13011. yqhA.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei15 – 3521HelicalSequence AnalysisAdd
BLAST
Transmembranei53 – 7321HelicalSequence AnalysisAdd
BLAST
Transmembranei136 – 15621HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 164164UPF0114 protein YqhAPRO_0000214367Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP67244.

Interactioni

Protein-protein interaction databases

STRINGi511145.b3002.

Structurei

3D structure databases

ProteinModelPortaliP67244.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0114 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG2862.
HOGENOMiHOG000262358.
InParanoidiP67244.
OMAiLIFASRW.
OrthoDBiEOG6VHZH0.
PhylomeDBiP67244.

Family and domain databases

HAMAPiMF_00143. UPF0114.
InterProiIPR005134. UPF0114.
IPR020761. UPF0114_bac.
IPR020765. UPF0114_gbac.
[Graphical view]
PfamiPF03350. UPF0114. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00645. HI0507. 1 hit.

Sequencei

Sequence statusi: Complete.

P67244-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MERFLENAMY ASRWLLAPVY FGLSLALVAL ALKFFQEIIH VLPNIFSMAE
60 70 80 90 100
SDLILVLLSL VDMTLVGGLL VMVMFSGYEN FVSQLDISEN KEKLNWLGKM
110 120 130 140 150
DATSLKNKVA ASIVAISSIH LLRVFMDAKN VPDNKLMWYV IIHLTFVLSA
160
FVMGYLDRLT RHNH
Length:164
Mass (Da):18,641
Last modified:October 10, 2004 - v1
Checksum:i61FC04B730394DF4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69169.1.
U00096 Genomic DNA. Translation: AAC76038.1.
AP009048 Genomic DNA. Translation: BAE77061.1.
PIRiH65086.
RefSeqiNP_417475.1. NC_000913.3.
YP_491197.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC76038; AAC76038; b3002.
BAE77061; BAE77061; BAE77061.
GeneIDi12932421.
947479.
KEGGiecj:Y75_p2931.
eco:b3002.
PATRICi32121422. VBIEscCol129921_3098.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69169.1.
U00096 Genomic DNA. Translation: AAC76038.1.
AP009048 Genomic DNA. Translation: BAE77061.1.
PIRiH65086.
RefSeqiNP_417475.1. NC_000913.3.
YP_491197.1. NC_007779.1.

3D structure databases

ProteinModelPortaliP67244.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi511145.b3002.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76038; AAC76038; b3002.
BAE77061; BAE77061; BAE77061.
GeneIDi12932421.
947479.
KEGGiecj:Y75_p2931.
eco:b3002.
PATRICi32121422. VBIEscCol129921_3098.

Organism-specific databases

EchoBASEiEB2832.
EcoGeneiEG13011. yqhA.

Phylogenomic databases

eggNOGiCOG2862.
HOGENOMiHOG000262358.
InParanoidiP67244.
OMAiLIFASRW.
OrthoDBiEOG6VHZH0.
PhylomeDBiP67244.

Enzyme and pathway databases

BioCyciEcoCyc:G7559-MONOMER.
ECOL316407:JW2971-MONOMER.

Miscellaneous databases

PROiP67244.

Gene expression databases

GenevestigatoriP67244.

Family and domain databases

HAMAPiMF_00143. UPF0114.
InterProiIPR005134. UPF0114.
IPR020761. UPF0114_bac.
IPR020765. UPF0114_gbac.
[Graphical view]
PfamiPF03350. UPF0114. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00645. HI0507. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYQHA_ECOLI
AccessioniPrimary (citable) accession number: P67244
Secondary accession number(s): P52082, Q2M9J5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 10, 2004
Last sequence update: October 10, 2004
Last modified: January 6, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.