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P67133

- YBEY_BRUSU

UniProt

P67133 - YBEY_BRUSU

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Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Brucella suis biovar 1 (strain 1330)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

Cofactori

Binds 1 zinc ion.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi122 – 1221Zinc; catalyticUniRule annotation
Metal bindingi126 – 1261Zinc; catalyticUniRule annotation
Metal bindingi132 – 1321Zinc; catalyticUniRule annotation

GO - Molecular functioni

  1. endoribonuclease activity Source: UniProtKB-HAMAP
  2. metalloendopeptidase activity Source: InterPro
  3. zinc ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. rRNA processing Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ybeYUniRule annotation
Ordered Locus Names:BR2156, BS1330_I2150
OrganismiBrucella suis biovar 1 (strain 1330)
Taxonomic identifieri204722 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000824: Chromosome I, UP000007104: Chromosome I

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 168168Endoribonuclease YbeYPRO_0000102424Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi204722.BR2156.

Structurei

3D structure databases

ProteinModelPortaliP67133.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the endoribonuclease YbeY family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0319.
HOGENOMiHOG000132869.
KOiK07042.
OrthoDBiEOG680X6D.

Family and domain databases

Gene3Di3.40.390.30. 1 hit.
HAMAPiMF_00009. Endoribonucl_YbeY.
InterProiIPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view]
PfamiPF02130. UPF0054. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
PROSITEiPS01306. UPF0054. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P67133 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSDNAIHIDI MIEAGNWPDE ASLESLVSKS VAAAWNNLGL KSATSELSVV
60 70 80 90 100
FTDDASIQLL NGEWRGKDKP TNVLSFPAFP VKAGSQPGPM LGDIVIARET
110 120 130 140 150
VEREAKEEGK PIENHLSHLV VHGFLHLLGY DHETDEEAEV MEAREREILH
160
ALAIPDPYAV SDEDINND
Length:168
Mass (Da):18,423
Last modified:October 11, 2004 - v1
Checksum:iBC6B2B7F0F074795
GO

Sequence cautioni

The sequence AAN31046.1 differs from that shown. Reason: Erroneous initiation.
The sequence AEM19463.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE014291 Genomic DNA. Translation: AAN31046.1. Different initiation.
CP002997 Genomic DNA. Translation: AEM19463.1. Different initiation.
RefSeqiNP_699131.1. NC_004310.3.
YP_005616955.1. NC_017251.1.

Genome annotation databases

EnsemblBacteriaiAAN31046; AAN31046; BR2156.
AEM19463; AEM19463; BS1330_I2150.
GeneIDi1167859.
12138579.
KEGGibms:BR2156.
bsi:BS1330_I2150.
PATRICi17792745. VBIBruSui107850_2193.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE014291 Genomic DNA. Translation: AAN31046.1 . Different initiation.
CP002997 Genomic DNA. Translation: AEM19463.1 . Different initiation.
RefSeqi NP_699131.1. NC_004310.3.
YP_005616955.1. NC_017251.1.

3D structure databases

ProteinModelPortali P67133.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 204722.BR2156.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAN31046 ; AAN31046 ; BR2156 .
AEM19463 ; AEM19463 ; BS1330_I2150 .
GeneIDi 1167859.
12138579.
KEGGi bms:BR2156.
bsi:BS1330_I2150.
PATRICi 17792745. VBIBruSui107850_2193.

Phylogenomic databases

eggNOGi COG0319.
HOGENOMi HOG000132869.
KOi K07042.
OrthoDBi EOG680X6D.

Family and domain databases

Gene3Di 3.40.390.30. 1 hit.
HAMAPi MF_00009. Endoribonucl_YbeY.
InterProi IPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view ]
Pfami PF02130. UPF0054. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
PROSITEi PS01306. UPF0054. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1330.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1330.

Entry informationi

Entry nameiYBEY_BRUSU
AccessioniPrimary (citable) accession number: P67133
Secondary accession number(s): G0K9I2, Q8FXU1, Q8YEA4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: October 29, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella suis
    Brucella suis (strain 1330): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3