Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P67133 (YBEY_BRUSU) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Endoribonuclease YbeY

EC=3.1.-.-
Gene names
Name:ybeY
Ordered Locus Names:BR2156, BS1330_I2150
OrganismBrucella suis biovar 1 (strain 1330) [Complete proteome] [HAMAP]
Taxonomic identifier204722 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella

Protein attributes

Sequence length168 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA By similarity. HAMAP-Rule MF_00009

Cofactor

Binds 1 zinc ion By similarity. HAMAP-Rule MF_00009

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00009.

Sequence similarities

Belongs to the endoribonuclease YbeY family.

Sequence caution

The sequence AAN31046.1 differs from that shown. Reason: Erroneous initiation.

The sequence AEM19463.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Ontologies

Keywords
   Biological processRibosome biogenesis
rRNA processing
   Cellular componentCytoplasm
   LigandMetal-binding
Zinc
   Molecular functionEndonuclease
Hydrolase
Nuclease
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionendoribonuclease activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

metalloendopeptidase activity

Inferred from electronic annotation. Source: InterPro

zinc ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 168168Endoribonuclease YbeY HAMAP-Rule MF_00009
PRO_0000102424

Sites

Metal binding1221Zinc; catalytic By similarity
Metal binding1261Zinc; catalytic By similarity
Metal binding1321Zinc; catalytic By similarity

Sequences

Sequence LengthMass (Da)Tools
P67133 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: BC6B2B7F0F074795

FASTA16818,423
        10         20         30         40         50         60 
MSDNAIHIDI MIEAGNWPDE ASLESLVSKS VAAAWNNLGL KSATSELSVV FTDDASIQLL 

        70         80         90        100        110        120 
NGEWRGKDKP TNVLSFPAFP VKAGSQPGPM LGDIVIARET VEREAKEEGK PIENHLSHLV 

       130        140        150        160 
VHGFLHLLGY DHETDEEAEV MEAREREILH ALAIPDPYAV SDEDINND 

« Hide

References

[1]"The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts."
Paulsen I.T., Seshadri R., Nelson K.E., Eisen J.A., Heidelberg J.F., Read T.D., Dodson R.J., Umayam L.A., Brinkac L.M., Beanan M.J., Daugherty S.C., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Nelson W.C., Ayodeji B., Kraul M. expand/collapse author list , Shetty J., Malek J.A., Van Aken S.E., Riedmuller S., Tettelin H., Gill S.R., White O., Salzberg S.L., Hoover D.L., Lindler L.E., Halling S.M., Boyle S.M., Fraser C.M.
Proc. Natl. Acad. Sci. U.S.A. 99:13148-13153(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 1330.
[2]"Revised genome sequence of Brucella suis 1330."
Tae H., Shallom S., Settlage R., Preston D., Adams L.G., Garner H.R.
J. Bacteriol. 193:6410-6410(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 1330.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE014291 Genomic DNA. Translation: AAN31046.1. Different initiation.
CP002997 Genomic DNA. Translation: AEM19463.1. Different initiation.
RefSeqNP_699131.1. NC_004310.3.
YP_005616955.1. NC_017251.1.

3D structure databases

ProteinModelPortalP67133.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING204722.BR2156.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAN31046; AAN31046; BR2156.
AEM19463; AEM19463; BS1330_I2150.
GeneID1167859.
12138579.
KEGGbms:BR2156.
bsi:BS1330_I2150.
PATRIC17792745. VBIBruSui107850_2193.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0319.
HOGENOMHOG000132869.
KOK07042.
OrthoDBEOG680X6D.

Family and domain databases

Gene3D3.40.390.30. 1 hit.
HAMAPMF_00009. Endoribonucl_YbeY.
InterProIPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view]
PfamPF02130. UPF0054. 1 hit.
[Graphical view]
TIGRFAMsTIGR00043. TIGR00043. 1 hit.
PROSITEPS01306. UPF0054. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYBEY_BRUSU
AccessionPrimary (citable) accession number: P67133
Secondary accession number(s): G0K9I2, Q8FXU1, Q8YEA4
Entry history
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: May 14, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Brucella suis

Brucella suis (strain 1330): entries and gene names