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Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Brucella suis biovar 1 (strain 1330)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi122Zinc; catalyticUniRule annotation1
Metal bindingi126Zinc; catalyticUniRule annotation1
Metal bindingi132Zinc; catalyticUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionEndonuclease, Hydrolase, Nuclease
Biological processRibosome biogenesis, rRNA processing
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ybeYUniRule annotation
Ordered Locus Names:BR2156, BS1330_I2150
OrganismiBrucella suis biovar 1 (strain 1330)
Taxonomic identifieri204722 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
Proteomesi
  • UP000007104 Componenti: Chromosome I

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001024241 – 168Endoribonuclease YbeYAdd BLAST168

Structurei

3D structure databases

ProteinModelPortaliP67133.
SMRiP67133.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the endoribonuclease YbeY family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000132869.
KOiK07042.

Family and domain databases

Gene3Di3.40.390.30. 1 hit.
HAMAPiMF_00009. Endoribonucl_YbeY. 1 hit.
InterProiView protein in InterPro
IPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
PfamiView protein in Pfam
PF02130. UPF0054. 1 hit.
TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
PROSITEiView protein in PROSITE
PS01306. UPF0054. 1 hit.

Sequencei

Sequence statusi: Complete.

P67133-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDNAIHIDI MIEAGNWPDE ASLESLVSKS VAAAWNNLGL KSATSELSVV
60 70 80 90 100
FTDDASIQLL NGEWRGKDKP TNVLSFPAFP VKAGSQPGPM LGDIVIARET
110 120 130 140 150
VEREAKEEGK PIENHLSHLV VHGFLHLLGY DHETDEEAEV MEAREREILH
160
ALAIPDPYAV SDEDINND
Length:168
Mass (Da):18,423
Last modified:October 11, 2004 - v1
Checksum:iBC6B2B7F0F074795
GO

Sequence cautioni

The sequence AAN31046 differs from that shown. Reason: Erroneous initiation.Curated
The sequence AEM19463 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014291 Genomic DNA. Translation: AAN31046.1. Different initiation.
CP002997 Genomic DNA. Translation: AEM19463.1. Different initiation.

Genome annotation databases

EnsemblBacteriaiAAN31046; AAN31046; BR2156.
AEM19463; AEM19463; BS1330_I2150.
KEGGibms:BR2156.
bsi:BS1330_I2150.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiYBEY_BRUSU
AccessioniPrimary (citable) accession number: P67133
Secondary accession number(s): G0K9I2, Q8FXU1, Q8YEA4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: June 7, 2017
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella suis
    Brucella suis (strain 1330): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families