Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

P67133

- YBEY_BRUSU

UniProt

P67133 - YBEY_BRUSU

Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Brucella suis biovar 1 (strain 1330)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 60 (01 Oct 2014)
      Sequence version 1 (11 Oct 2004)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

    Cofactori

    Binds 1 zinc ion.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi122 – 1221Zinc; catalyticUniRule annotation
    Metal bindingi126 – 1261Zinc; catalyticUniRule annotation
    Metal bindingi132 – 1321Zinc; catalyticUniRule annotation

    GO - Molecular functioni

    1. endoribonuclease activity Source: UniProtKB-HAMAP
    2. metalloendopeptidase activity Source: InterPro
    3. zinc ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. rRNA processing Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Endonuclease, Hydrolase, Nuclease

    Keywords - Biological processi

    Ribosome biogenesis, rRNA processing

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
    Gene namesi
    Name:ybeYUniRule annotation
    Ordered Locus Names:BR2156, BS1330_I2150
    OrganismiBrucella suis biovar 1 (strain 1330)
    Taxonomic identifieri204722 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
    ProteomesiUP000000824: Chromosome I, UP000007104: Chromosome I

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 168168Endoribonuclease YbeYPRO_0000102424Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi204722.BR2156.

    Structurei

    3D structure databases

    ProteinModelPortaliP67133.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the endoribonuclease YbeY family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0319.
    HOGENOMiHOG000132869.
    KOiK07042.
    OrthoDBiEOG680X6D.

    Family and domain databases

    Gene3Di3.40.390.30. 1 hit.
    HAMAPiMF_00009. Endoribonucl_YbeY.
    InterProiIPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view]
    PfamiPF02130. UPF0054. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
    PROSITEiPS01306. UPF0054. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P67133-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSDNAIHIDI MIEAGNWPDE ASLESLVSKS VAAAWNNLGL KSATSELSVV    50
    FTDDASIQLL NGEWRGKDKP TNVLSFPAFP VKAGSQPGPM LGDIVIARET 100
    VEREAKEEGK PIENHLSHLV VHGFLHLLGY DHETDEEAEV MEAREREILH 150
    ALAIPDPYAV SDEDINND 168
    Length:168
    Mass (Da):18,423
    Last modified:October 11, 2004 - v1
    Checksum:iBC6B2B7F0F074795
    GO

    Sequence cautioni

    The sequence AAN31046.1 differs from that shown. Reason: Erroneous initiation.
    The sequence AEM19463.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014291 Genomic DNA. Translation: AAN31046.1. Different initiation.
    CP002997 Genomic DNA. Translation: AEM19463.1. Different initiation.
    RefSeqiNP_699131.1. NC_004310.3.
    YP_005616955.1. NC_017251.1.

    Genome annotation databases

    EnsemblBacteriaiAAN31046; AAN31046; BR2156.
    AEM19463; AEM19463; BS1330_I2150.
    GeneIDi1167859.
    12138579.
    KEGGibms:BR2156.
    bsi:BS1330_I2150.
    PATRICi17792745. VBIBruSui107850_2193.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE014291 Genomic DNA. Translation: AAN31046.1 . Different initiation.
    CP002997 Genomic DNA. Translation: AEM19463.1 . Different initiation.
    RefSeqi NP_699131.1. NC_004310.3.
    YP_005616955.1. NC_017251.1.

    3D structure databases

    ProteinModelPortali P67133.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 204722.BR2156.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAN31046 ; AAN31046 ; BR2156 .
    AEM19463 ; AEM19463 ; BS1330_I2150 .
    GeneIDi 1167859.
    12138579.
    KEGGi bms:BR2156.
    bsi:BS1330_I2150.
    PATRICi 17792745. VBIBruSui107850_2193.

    Phylogenomic databases

    eggNOGi COG0319.
    HOGENOMi HOG000132869.
    KOi K07042.
    OrthoDBi EOG680X6D.

    Family and domain databases

    Gene3Di 3.40.390.30. 1 hit.
    HAMAPi MF_00009. Endoribonucl_YbeY.
    InterProi IPR023091. MetalPrtase_cat_dom_prd.
    IPR002036. YbeY.
    IPR020549. YbeY_CS.
    [Graphical view ]
    Pfami PF02130. UPF0054. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
    PROSITEi PS01306. UPF0054. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 1330.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 1330.

    Entry informationi

    Entry nameiYBEY_BRUSU
    AccessioniPrimary (citable) accession number: P67133
    Secondary accession number(s): G0K9I2, Q8FXU1, Q8YEA4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 11, 2004
    Last sequence update: October 11, 2004
    Last modified: October 1, 2014
    This is version 60 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Brucella suis
      Brucella suis (strain 1330): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3