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P67132

- YBEY_BRUME

UniProt

P67132 - YBEY_BRUME

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Protein

Endoribonuclease YbeY

Gene

ybeY

Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.UniRule annotation

Cofactori

Binds 1 zinc ion.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi122 – 1221Zinc; catalyticUniRule annotation
Metal bindingi126 – 1261Zinc; catalyticUniRule annotation
Metal bindingi132 – 1321Zinc; catalyticUniRule annotation

GO - Molecular functioni

  1. endoribonuclease activity Source: UniProtKB-HAMAP
  2. metalloendopeptidase activity Source: InterPro
  3. zinc ion binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. rRNA processing Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciBMEL224914:GCJ0-2021-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Endoribonuclease YbeYUniRule annotation (EC:3.1.-.-UniRule annotation)
Gene namesi
Name:ybeYUniRule annotation
Ordered Locus Names:BMEI1974
OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Taxonomic identifieri224914 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000419: Chromosome I

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 168168Endoribonuclease YbeYPRO_0000102423Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224914.BMEI1974.

Structurei

3D structure databases

ProteinModelPortaliP67132.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the endoribonuclease YbeY family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000132869.
KOiK07042.
OMAiDIIIARE.
OrthoDBiEOG680X6D.

Family and domain databases

Gene3Di3.40.390.30. 1 hit.
HAMAPiMF_00009. Endoribonucl_YbeY.
InterProiIPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view]
PfamiPF02130. UPF0054. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00043. TIGR00043. 1 hit.
PROSITEiPS01306. UPF0054. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P67132-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSDNAIHIDI MIEAGNWPDE ASLESLVSKS VAAAWNNLGL KSATSELSVV
60 70 80 90 100
FTDDASIQLL NGEWRGKDKP TNVLSFPAFP VKAGSQPGPM LGDIVIARET
110 120 130 140 150
VEREAKEEGK PIENHLSHLV VHGFLHLLGY DHETDEEAEV MEAREREILH
160
ALAIPDPYAV SDEDINND
Length:168
Mass (Da):18,423
Last modified:October 11, 2004 - v1
Checksum:iBC6B2B7F0F074795
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008917 Genomic DNA. Translation: AAL53155.1.
PIRiAH3498.
RefSeqiNP_540891.1. NC_003317.1.

Genome annotation databases

EnsemblBacteriaiAAL53155; AAL53155; BMEI1974.
GeneIDi1197685.
KEGGibme:BMEI1974.
PATRICi17854389. VBIBruMel92729_2178.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008917 Genomic DNA. Translation: AAL53155.1 .
PIRi AH3498.
RefSeqi NP_540891.1. NC_003317.1.

3D structure databases

ProteinModelPortali P67132.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224914.BMEI1974.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAL53155 ; AAL53155 ; BMEI1974 .
GeneIDi 1197685.
KEGGi bme:BMEI1974.
PATRICi 17854389. VBIBruMel92729_2178.

Phylogenomic databases

HOGENOMi HOG000132869.
KOi K07042.
OMAi DIIIARE.
OrthoDBi EOG680X6D.

Enzyme and pathway databases

BioCyci BMEL224914:GCJ0-2021-MONOMER.

Family and domain databases

Gene3Di 3.40.390.30. 1 hit.
HAMAPi MF_00009. Endoribonucl_YbeY.
InterProi IPR023091. MetalPrtase_cat_dom_prd.
IPR002036. YbeY.
IPR020549. YbeY_CS.
[Graphical view ]
Pfami PF02130. UPF0054. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR00043. TIGR00043. 1 hit.
PROSITEi PS01306. UPF0054. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 16M / ATCC 23456 / NCTC 10094.

Entry informationi

Entry nameiYBEY_BRUME
AccessioniPrimary (citable) accession number: P67132
Secondary accession number(s): Q8FXU1, Q8YEA4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: October 29, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella melitensis
    Brucella melitensis (strain 16M): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3