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Protein

UPF0053 inner membrane protein YgdQ

Gene

ygdQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7460-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0053 inner membrane protein YgdQ
Gene namesi
Name:ygdQ
Ordered Locus Names:b2832, JW2800
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13092 ygdQ

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 17PeriplasmicSequence analysisAdd BLAST17
Transmembranei18 – 38HelicalSequence analysisAdd BLAST21
Topological domaini39 – 50CytoplasmicSequence analysisAdd BLAST12
Transmembranei51 – 71HelicalSequence analysisAdd BLAST21
Topological domaini72 – 79PeriplasmicSequence analysis8
Transmembranei80 – 100HelicalSequence analysisAdd BLAST21
Topological domaini101 – 124CytoplasmicSequence analysisAdd BLAST24
Transmembranei125 – 145HelicalSequence analysisAdd BLAST21
Topological domaini146 – 151PeriplasmicSequence analysis6
Transmembranei152 – 172HelicalSequence analysisAdd BLAST21
Topological domaini173 – 186CytoplasmicSequence analysisAdd BLAST14
Transmembranei187 – 207HelicalSequence analysisAdd BLAST21
Topological domaini208 – 209PeriplasmicSequence analysis2
Transmembranei210 – 230HelicalSequence analysisAdd BLAST21
Topological domaini231 – 237CytoplasmicSequence analysis7

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000883661 – 237UPF0053 inner membrane protein YgdQAdd BLAST237

Proteomic databases

PaxDbiP67127
PRIDEiP67127

Interactioni

Protein-protein interaction databases

BioGridi4263142, 15 interactors
STRINGi316385.ECDH10B_3002

Structurei

3D structure databases

ProteinModelPortaliP67127
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0053 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105EE5 Bacteria
COG0861 LUCA
HOGENOMiHOG000258483
InParanoidiP67127
OMAiIMFLDIV
PhylomeDBiP67127

Family and domain databases

InterProiView protein in InterPro
IPR005496 Integral_membrane_TerC
PfamiView protein in Pfam
PF03741 TerC, 1 hit

Sequencei

Sequence statusi: Complete.

P67127-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLFAWITDPN AWLALGTLTL LEIVLGIDNI IFLSLVVAKL PTAQRAHARR
60 70 80 90 100
LGLAGAMVMR LALLASIAWV TRLTNPLFTI FSQEISARDL ILLLGGLFLI
110 120 130 140 150
WKASKEIHES IEGEEEGLKT RVSSFLGAIV QIMLLDIIFS LDSVITAVGL
160 170 180 190 200
SDHLFIMMAA VVIAVGVMMF AARSIGDFVE RHPSVKMLAL SFLILVGFTL
210 220 230
ILESFDIHVP KGYIYFAMFF SIAVESLNLI RNKKNPL
Length:237
Mass (Da):26,157
Last modified:October 11, 2004 - v1
Checksum:iE5680AB2054A0D8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA Translation: AAB40479.1
U00096 Genomic DNA Translation: AAC75871.1
AP009048 Genomic DNA Translation: BAE76901.1
PIRiA65066
RefSeqiNP_417309.1, NC_000913.3
WP_000895624.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75871; AAC75871; b2832
BAE76901; BAE76901; BAE76901
GeneIDi947295
KEGGiecj:JW2800
eco:b2832
PATRICifig|1411691.4.peg.3902

Similar proteinsi

Entry informationi

Entry nameiYGDQ_ECOLI
AccessioniPrimary (citable) accession number: P67127
Secondary accession number(s): Q2MA05, Q46931
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: March 28, 2018
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health