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Reviewed, UniProtKB/Swiss-Prot P67080 (YGGS_ECOLI)

Last modified November 24, 2009. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    UPF0001 protein yggS
Gene names
Name: yggS
Ordered Locus Names: b2951, JW2918
OrganismEscherichia coli (strain K12) [Complete proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

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Protein attributes

Sequence length234 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity.

Sequence similarities

Belongs to the UPF0001 family.

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Ontologies

Keywords
   LigandPyridoxal phosphate
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
None. [Check GOA]

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 234234UPF0001 protein yggS
PRO_0000163196

Amino acid modifications

Modified residue361N6-(pyridoxal phosphate)lysine By similarity

Secondary structure

1 ...................................... 234
Helix Strand Turn

Details...

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Sequences

Sequence LengthMass (Da)Tools
P67080-1 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: 2AA431E2D75BCA59

FASTA23425,787
        10         20         30         40         50         60 
MNDIAHNLAQ VRDKISAAAT RCGRSPEEIT LLAVSKTKPA SAIAEAIDAG QRQFGENYVQ 

        70         80         90        100        110        120 
EGVDKIRHFQ ELGVTGLEWH FIGPLQSNKS RLVAEHFDWC HTIDRLRIAT RLNDQRPAEL 

       130        140        150        160        170        180 
PPLNVLIQIN ISDENSKSGI QLAELDELAA AVAELPRLRL RGLMAIPAPE SEYVRQFEVA 

       190        200        210        220        230 
RQMAVAFAGL KTRYPHIDTL SLGMSDDMEA AIAAGSTMVR IGTAIFGARD YSKK

« Hide

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References

[1]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[2]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

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Cross-references

Sequence databases

U28377 Genomic DNA. Translation: AAA69118.1.
U00096 Genomic DNA. Translation: AAC75988.1.
AP009048 Genomic DNA. Translation: BAE77014.1.
PIRF65080.
RefSeqAP_003508.1.
NP_417426.1.

3D structure databases

EntryMethodResolution (Å)ChainPositionsPDBsum
1W8GX-ray2.00A1-234[»]
ModBaseSearch...

Protein-protein interaction databases

STRINGP67080.

Genome annotation databases

GeneID947423.
GenomeReviewsGene locus JW2918 in contig AP009048_GR.
Gene locus b2951 in contig U00096_GR.
KEGGecj:JW2918.
eco:b2951.

Organism-specific databases

EchoBASEEB2804.
EcoGeneEG12979. yggS.
CMRSearch...

Phylogenomic databases

HOGENOMP67080.
OMAHGSTMVR

Enzyme and pathway databases

BioCycEcoCyc:G7527-MON.
ECOL168927:B2951-MON.

Gene expression databases

GenevestigatorP67080.

Family and domain databases

InterProIPR001608. Ala_racemase_N.
IPR011078. Prd-pyrdxlP-dep_enz_YBL036C.
[Graphical view]
PANTHERPTHR10146. PP_YBL036C. 1 hit.
PfamPF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PIRSFPIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMsTIGR00044. PP_YBL036C. 1 hit.
PROSITEPS01211. UPF0001. 1 hit.
[Graphical view]
ProtoNetSearch...

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Entry information

Entry nameYGGS_ECOLI
AccessionPrimary (citable) accession number: P67080
Secondary accession number(s): P52054, Q2M9P2
Entry history
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 24, 2009
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents