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Protein

Uncharacterized lipoprotein YgdR

Gene

ygdR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7461-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized lipoprotein YgdR
Gene namesi
Name:ygdR
Ordered Locus Names:b2833, JW2801
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13076 ygdR

Subcellular locationi

  • Cell membrane PROSITE-ProRule annotation; Lipid-anchor PROSITE-ProRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19PROSITE-ProRule annotationAdd BLAST19
ChainiPRO_000001805020 – 72Uncharacterized lipoprotein YgdRAdd BLAST53

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi20N-palmitoyl cysteinePROSITE-ProRule annotation1
Lipidationi20S-diacylglycerol cysteinePROSITE-ProRule annotation1

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiP65294
PRIDEiP65294

Interactioni

Protein-protein interaction databases

BioGridi4262302, 11 interactors
IntActiP65294, 1 interactor
STRINGi316385.ECDH10B_3003

Structurei

Secondary structure

172
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi23 – 28Combined sources6
Beta strandi33 – 35Combined sources3
Beta strandi41 – 43Combined sources3
Turni44 – 47Combined sources4
Beta strandi48 – 52Combined sources5
Beta strandi54 – 56Combined sources3
Beta strandi58 – 62Combined sources5
Helixi63 – 65Combined sources3
Beta strandi66 – 72Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2JN0NMR-A21-72[»]
3FIFX-ray2.70A/B/C/D/E/F/G/H21-72[»]
ProteinModelPortaliP65294
SMRiP65294
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP65294

Family & Domainsi

Sequence similaritiesi

To E.coli YgdI.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105SUV Bacteria
ENOG4111UKF LUCA
HOGENOMiHOG000282509
OMAiAVMISGC

Family and domain databases

InterProiView protein in InterPro
IPR010305 DUF903
IPR010920 LSM_dom_sf
PANTHERiPTHR37011 PTHR37011, 1 hit
PfamiView protein in Pfam
PF06004 DUF903, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit
PROSITEiView protein in PROSITE
PS51257 PROKAR_LIPOPROTEIN, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P65294-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKWAVIISA VGLAFAVSGC SSDYVMATKD GRMILTDGKP EIDDDTGLVS
60 70
YHDQQGNAMQ INRDDVSQII ER
Length:72
Mass (Da):7,877
Last modified:October 11, 2004 - v1
Checksum:i7E053CA350712598
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA Translation: AAB40480.1
U00096 Genomic DNA Translation: AAC75872.1
AP009048 Genomic DNA Translation: BAE76902.1
PIRiB65066
RefSeqiNP_417310.1, NC_000913.3
WP_000758655.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75872; AAC75872; b2833
BAE76902; BAE76902; BAE76902
GeneIDi947304
KEGGiecj:JW2801
eco:b2833
PATRICifig|511145.12.peg.2931

Similar proteinsi

Entry informationi

Entry nameiYGDR_ECOLI
AccessioniPrimary (citable) accession number: P65294
Secondary accession number(s): Q2MA04, Q46932
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: April 25, 2018
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

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