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Protein

Uncharacterized lipoprotein YgdI

Gene

ygdI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7453-MONOMER.
ECOL316407:JW5448-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized lipoprotein YgdI
Gene namesi
Name:ygdI
Ordered Locus Names:b2809, JW5448
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13081. ygdI.

Subcellular locationi

  • Cell membrane PROSITE-ProRule annotation; Lipid-anchor PROSITE-ProRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19PROSITE-ProRule annotationAdd BLAST19
ChainiPRO_000001804820 – 75Uncharacterized lipoprotein YgdIAdd BLAST56

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi20N-palmitoyl cysteinePROSITE-ProRule annotation1
Lipidationi20S-diacylglycerol cysteinePROSITE-ProRule annotation1

Keywords - PTMi

Lipoprotein, Palmitate

Proteomic databases

PaxDbiP65292.
PRIDEiP65292.

Interactioni

Protein-protein interaction databases

BioGridi4261125. 10 interactors.
DIPiDIP-48041N.
IntActiP65292. 2 interactors.
STRINGi511145.b2809.

Structurei

3D structure databases

ProteinModelPortaliP65292.
SMRiP65292.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YgdR.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105M5B. Bacteria.
ENOG4111UW1. LUCA.
HOGENOMiHOG000282509.
OMAiGNQQQIN.

Family and domain databases

InterProiIPR010305. DUF903.
IPR010920. LSM_dom.
[Graphical view]
PfamiPF06004. DUF903. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P65292-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKTAAIISA CMLTFALSAC SGSNYVMHTN DGRTIVSDGK PQTDNDTGMI
60 70
SYKDANGNKQ QINRTDVKEM VELDQ
Length:75
Mass (Da):8,174
Last modified:October 11, 2004 - v1
Checksum:iF3D6717F8B7EBEC8
GO

Sequence cautioni

The sequence AAB40459 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA. Translation: AAB40459.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75851.2.
AP009048 Genomic DNA. Translation: BAE76881.1.
RefSeqiNP_417289.2. NC_000913.3.
WP_000750398.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75851; AAC75851; b2809.
BAE76881; BAE76881; BAE76881.
GeneIDi947276.
KEGGiecj:JW5448.
eco:b2809.
PATRICi32121034. VBIEscCol129921_2909.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29581 Genomic DNA. Translation: AAB40459.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75851.2.
AP009048 Genomic DNA. Translation: BAE76881.1.
RefSeqiNP_417289.2. NC_000913.3.
WP_000750398.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP65292.
SMRiP65292.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261125. 10 interactors.
DIPiDIP-48041N.
IntActiP65292. 2 interactors.
STRINGi511145.b2809.

Proteomic databases

PaxDbiP65292.
PRIDEiP65292.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75851; AAC75851; b2809.
BAE76881; BAE76881; BAE76881.
GeneIDi947276.
KEGGiecj:JW5448.
eco:b2809.
PATRICi32121034. VBIEscCol129921_2909.

Organism-specific databases

EchoBASEiEB2890.
EcoGeneiEG13081. ygdI.

Phylogenomic databases

eggNOGiENOG4105M5B. Bacteria.
ENOG4111UW1. LUCA.
HOGENOMiHOG000282509.
OMAiGNQQQIN.

Enzyme and pathway databases

BioCyciEcoCyc:G7453-MONOMER.
ECOL316407:JW5448-MONOMER.

Miscellaneous databases

PROiP65292.

Family and domain databases

InterProiIPR010305. DUF903.
IPR010920. LSM_dom.
[Graphical view]
PfamiPF06004. DUF903. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGDI_ECOLI
AccessioniPrimary (citable) accession number: P65292
Secondary accession number(s): Q2MA25, Q46924
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.