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Protein

Uncharacterized protein YqjD

Gene

yqjD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Upon overexpression inhibits growth.

GO - Molecular functioni

  • ribosomal small subunit binding Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7612-MONOMER.
ECOL316407:JW3069-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YqjD
Gene namesi
Name:yqjD
Ordered Locus Names:b3098, JW3069
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12743. yqjD.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei81 – 9818HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • cell pole Source: EcoCyc
  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

Pathology & Biotechi

Disruption phenotypei

Not essential (in strain K12 / BW25113).1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 101101Uncharacterized protein YqjDPRO_0000169428Add
BLAST

Proteomic databases

EPDiP64581.
PaxDbiP64581.
PRIDEiP64581.

Expressioni

Inductioni

Maximally expressed after 2 days growth, i.e. during stationary phase (at protein level). Expression is regulated by RpoS.1 Publication

Interactioni

Subunit structurei

Binds to 70S and 100S ribosomes, probably via the 30S subunit.

Protein-protein interaction databases

BioGridi4259439. 31 interactions.
DIPiDIP-47920N.
IntActiP64581. 1 interaction.
MINTiMINT-1308243.
STRINGi511145.b3098.

Structurei

3D structure databases

ProteinModelPortaliP64581.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 1212Required for binding to 30S subunits in vitroAdd
BLAST

Sequence similaritiesi

Belongs to the ElaB/YgaM/YqjD family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105NE1. Bacteria.
COG4575. LUCA.
HOGENOMiHOG000256775.
InParanoidiP64581.
OMAiDHPWQAV.
OrthoDBiEOG6DNTDK.

Family and domain databases

InterProiIPR010279. DUF883_ElaB.
[Graphical view]
PfamiPF05957. DUF883. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P64581-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKEHTTEHL RAELKSLSDT LEEVLSSSGE KSKEELSKIR SKAEQALKQS
60 70 80 90 100
RYRLGETGDA IAKQTRVAAA RADEYVRENP WTGVGIGAAI GVVLGVLLSR

R
Length:101
Mass (Da):11,051
Last modified:October 11, 2004 - v1
Checksum:iC2CBCE2A482BCC14
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57902.1.
U00096 Genomic DNA. Translation: AAC76133.1.
AP009048 Genomic DNA. Translation: BAE77148.1.
PIRiG65098.
RefSeqiNP_417569.1. NC_000913.3.
WP_000031415.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76133; AAC76133; b3098.
BAE77148; BAE77148; BAE77148.
GeneIDi947614.
KEGGiecj:JW3069.
eco:b3098.
PATRICi32121616. VBIEscCol129921_3194.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U18997 Genomic DNA. Translation: AAA57902.1.
U00096 Genomic DNA. Translation: AAC76133.1.
AP009048 Genomic DNA. Translation: BAE77148.1.
PIRiG65098.
RefSeqiNP_417569.1. NC_000913.3.
WP_000031415.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64581.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259439. 31 interactions.
DIPiDIP-47920N.
IntActiP64581. 1 interaction.
MINTiMINT-1308243.
STRINGi511145.b3098.

Proteomic databases

EPDiP64581.
PaxDbiP64581.
PRIDEiP64581.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76133; AAC76133; b3098.
BAE77148; BAE77148; BAE77148.
GeneIDi947614.
KEGGiecj:JW3069.
eco:b3098.
PATRICi32121616. VBIEscCol129921_3194.

Organism-specific databases

EchoBASEiEB2599.
EcoGeneiEG12743. yqjD.

Phylogenomic databases

eggNOGiENOG4105NE1. Bacteria.
COG4575. LUCA.
HOGENOMiHOG000256775.
InParanoidiP64581.
OMAiDHPWQAV.
OrthoDBiEOG6DNTDK.

Enzyme and pathway databases

BioCyciEcoCyc:G7612-MONOMER.
ECOL316407:JW3069-MONOMER.

Miscellaneous databases

PROiP64581.

Family and domain databases

InterProiIPR010279. DUF883_ElaB.
[Graphical view]
PfamiPF05957. DUF883. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli."
    Yoshida H., Maki Y., Furuike S., Sakai A., Ueta M., Wada A.
    J. Bacteriol. 194:4178-4183(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: RIBOSOME-BINDING, SUBCELLULAR LOCATION, INDUCTION, DISRUPTION PHENOTYPE.
    Strain: K12 / BW25113 and K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Isolation and identification of new inner membrane-associated proteins that localize to cell poles in Escherichia coli."
    Li G., Young K.D.
    Mol. Microbiol. 84:276-295(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBCELLULAR LOCATION.
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYQJD_ECOLI
AccessioniPrimary (citable) accession number: P64581
Secondary accession number(s): P42617, Q2M9A8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: March 16, 2016
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.