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Protein

Uncharacterized protein YgfM

Gene

ygfM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7499-MONOMER.
ECOL316407:JW2848-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YgfM
Gene namesi
Name:ygfM
Ordered Locus Names:b2880, JW2848
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13063. ygfM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001693561 – 259Uncharacterized protein YgfMAdd BLAST259

Proteomic databases

PaxDbiP64557.
PRIDEiP64557.

Interactioni

Protein-protein interaction databases

BioGridi4262327. 17 interactors.
DIPiDIP-48265N.
STRINGi511145.b2880.

Structurei

3D structure databases

ProteinModelPortaliP64557.
SMRiP64557.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 159FAD-binding PCMH-typePROSITE-ProRule annotationAdd BLAST159

Sequence similaritiesi

Contains 1 FAD-binding PCMH-type domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410873Y. Bacteria.
ENOG410YU1D. LUCA.
HOGENOMiHOG000277448.
KOiK12529.
OMAiCATRRIS.

Family and domain databases

Gene3Di3.30.465.10. 1 hit.
InterProiIPR005107. CO_DH_flav_C.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR002346. Mopterin_DH_FAD-bd.
IPR017698. Se_Rdtase_FAD-bd_su.
[Graphical view]
PfamiPF03450. CO_deh_flav_C. 1 hit.
PF00941. FAD_binding_5. 1 hit.
[Graphical view]
SMARTiSM01092. CO_deh_flav_C. 1 hit.
[Graphical view]
SUPFAMiSSF55447. SSF55447. 1 hit.
SSF56176. SSF56176. 1 hit.
TIGRFAMsiTIGR03312. Se_sel_red_FAD. 1 hit.
PROSITEiPS51387. FAD_PCMH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P64557-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIEQFFRPDS VEQALELKRR YQDEAVWFAG GSKLNATPTR TDKKIAISLQ
60 70 80 90 100
DLELDWVDWD NGALRIGAMS RLQPLRDARF IPAALREALG FVYSRHVRNQ
110 120 130 140 150
STIGGEIAAR QEESVLLPVL LALDAELVFG NGETLSIEDY LACPCDRLLT
160 170 180 190 200
EIIIKDPYRT CATRKISRSQ AGLTVVTAAV AMTDHDGMRI ALDGVASKAL
210 220 230 240 250
RLHDVEKQNL EGNALEQAVA NAIFPQEDLR GSVAYKRYIT GVLVADLYAD

CQQAGEEAV
Length:259
Mass (Da):28,650
Last modified:October 11, 2004 - v1
Checksum:i9232F661838F875B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83061.1.
U00096 Genomic DNA. Translation: AAC75918.1.
AP009048 Genomic DNA. Translation: BAE76946.1.
PIRiH65071.
RefSeqiNP_417356.1. NC_000913.3.
WP_000572462.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75918; AAC75918; b2880.
BAE76946; BAE76946; BAE76946.
GeneIDi949071.
KEGGiecj:JW2848.
eco:b2880.
PATRICi32121170. VBIEscCol129921_2973.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83061.1.
U00096 Genomic DNA. Translation: AAC75918.1.
AP009048 Genomic DNA. Translation: BAE76946.1.
PIRiH65071.
RefSeqiNP_417356.1. NC_000913.3.
WP_000572462.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64557.
SMRiP64557.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262327. 17 interactors.
DIPiDIP-48265N.
STRINGi511145.b2880.

Proteomic databases

PaxDbiP64557.
PRIDEiP64557.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75918; AAC75918; b2880.
BAE76946; BAE76946; BAE76946.
GeneIDi949071.
KEGGiecj:JW2848.
eco:b2880.
PATRICi32121170. VBIEscCol129921_2973.

Organism-specific databases

EchoBASEiEB2875.
EcoGeneiEG13063. ygfM.

Phylogenomic databases

eggNOGiENOG410873Y. Bacteria.
ENOG410YU1D. LUCA.
HOGENOMiHOG000277448.
KOiK12529.
OMAiCATRRIS.

Enzyme and pathway databases

BioCyciEcoCyc:G7499-MONOMER.
ECOL316407:JW2848-MONOMER.

Miscellaneous databases

PROiP64557.

Family and domain databases

Gene3Di3.30.465.10. 1 hit.
InterProiIPR005107. CO_DH_flav_C.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR002346. Mopterin_DH_FAD-bd.
IPR017698. Se_Rdtase_FAD-bd_su.
[Graphical view]
PfamiPF03450. CO_deh_flav_C. 1 hit.
PF00941. FAD_binding_5. 1 hit.
[Graphical view]
SMARTiSM01092. CO_deh_flav_C. 1 hit.
[Graphical view]
SUPFAMiSSF55447. SSF55447. 1 hit.
SSF56176. SSF56176. 1 hit.
TIGRFAMsiTIGR03312. Se_sel_red_FAD. 1 hit.
PROSITEiPS51387. FAD_PCMH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGFM_ECOLI
AccessioniPrimary (citable) accession number: P64557
Secondary accession number(s): Q2M9W0, Q46813
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.