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Reviewed, UniProtKB/Swiss-Prot P64554 (YGCF_ECOLI)

Last modified December 15, 2009. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    Uncharacterized protein ygcF
Gene names
Name: ygcF
Ordered Locus Names: b2777, JW2748
OrganismEscherichia coli (strain K12) [Complete proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length223 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

General annotation (Comments)

Cofactor

Binds 1 4Fe-4S cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine Potential.

Sequence similarities

To H.influenzae HI1189.

Binary interactions

With

Entry

#Exp.

IntAct

Notes

rplBP604221EBI-1126335,EBI-543515

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 223223Uncharacterized protein ygcF
PRO_0000169316

Sites

Metal binding311Iron-sulfur (4Fe-4S-S-AdoMet) Potential
Metal binding351Iron-sulfur (4Fe-4S-S-AdoMet) Potential
Metal binding381Iron-sulfur (4Fe-4S-S-AdoMet) Potential

Sequences

Sequence LengthMass (Da)Tools
P64554-1 [UniParc].

Last modified October 11, 2004. Version 1.
Checksum: A717AAF18F2A5D70

FASTA22325,030
        10         20         30         40         50         60 
MQYPINEMFQ TLQGEGYFTG VPAIFIRLQG CPVGCAWCDT KHTWEKLEDR EVSLFSILAK 

        70         80         90        100        110        120 
TKESDKWGAA SSEDLLAVIG RQGYTARHVV ITGGEPCIHD LLPLTDLLEK NGFSCQIETS 

       130        140        150        160        170        180 
GTHEVRCTPN TWVTVSPKLN MRGGYEVLSQ ALERANEIKH PVGRVRDIEA LDELLATLTD 

       190        200        210        220 
DKPRVIALQP ISQKDDATRL CIETCIARNW RLSMQTHKYL NIA 

« Hide

References

[1]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[2]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases

U29580 Genomic DNA. Translation: AAA69287.1.
U00096 Genomic DNA. Translation: AAC75819.1.
AP009048 Genomic DNA. Translation: BAE76851.1.
PIRE65059.
RefSeqAP_003343.1.
NP_417257.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

IntActP64554. 2 interactions.
STRINGP64554.

Genome annotation databases

GeneID947527.
GenomeReviewsGene locus JW2748 in contig AP009048_GR.
Gene locus b2777 in contig U00096_GR.
KEGGecj:JW2748.
eco:b2777.

Organism-specific databases

EchoBASEEB2849.
EcoGeneEG13034. ygcF.
CMRSearch...

Phylogenomic databases

HOGENOMHBG507714.
OMATICLQPI.

Enzyme and pathway databases

BioCycEcoCyc:G7443-MON.
ECOL168927:B2777-MON.

Gene expression databases

GenevestigatorP64554.

Family and domain databases

InterProIPR007197. Radical_SAM.
[Graphical view]
PfamPF04055. Radical_SAM. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYGCF_ECOLI
AccessionPrimary (citable) accession number: P64554
Secondary accession number(s): P55139, Q2MA55
Entry history
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: December 15, 2009
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents