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Protein

Uncharacterized protein YfiR

Gene

yfiR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • bacterial-type flagellum-dependent swarming motility Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7354-MONOMER.
ECOL316407:JW2584-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YfiR
Gene namesi
Name:yfiR
Ordered Locus Names:b2603, JW2584
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14225. yfiR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 172150Uncharacterized protein YfiRPRO_0000013892Add
BLAST

Proteomic databases

PaxDbiP64548.
PRIDEiP64548.

Interactioni

Protein-protein interaction databases

BioGridi4260612. 8 interactions.
IntActiP64548. 2 interactions.
STRINGi511145.b2603.

Structurei

3D structure databases

ProteinModelPortaliP64548.
SMRiP64548. Positions 32-169.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108WS1. Bacteria.
ENOG4111MUY. LUCA.
HOGENOMiHOG000217427.
InParanoidiP64548.
OMAiEADDPCT.
OrthoDBiEOG6RFZXH.

Family and domain databases

InterProiIPR025293. DUF4154.
[Graphical view]
PfamiPF13689. DUF4154. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P64548-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFSHRLFLL LILLLTGAPI LAQEPSDVAK NVRMMVSGIV SYTRWPALSG
60 70 80 90 100
PPKLCIFSSS RFSTALQENA ATSLPYLPVI IHTQQEAMIS GCNGFYFGNE
110 120 130 140 150
SPTFQMELTE QYPSKALLLI AEQNTECIIG SAFCLIIHNN DVRFAVNLDA
160 170
LSRSGVKVNP DVLMLARKKN DG
Length:172
Mass (Da):18,978
Last modified:October 11, 2004 - v1
Checksum:i2E2CC812E49F3AD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75652.1.
AP009048 Genomic DNA. Translation: BAE76756.1.
PIRiF65038.
RefSeqiNP_417094.1. NC_000913.3.
WP_001212391.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75652; AAC75652; b2603.
BAE76756; BAE76756; BAE76756.
GeneIDi947090.
KEGGiecj:JW2584.
eco:b2603.
PATRICi32120605. VBIEscCol129921_2701.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75652.1.
AP009048 Genomic DNA. Translation: BAE76756.1.
PIRiF65038.
RefSeqiNP_417094.1. NC_000913.3.
WP_001212391.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64548.
SMRiP64548. Positions 32-169.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260612. 8 interactions.
IntActiP64548. 2 interactions.
STRINGi511145.b2603.

Proteomic databases

PaxDbiP64548.
PRIDEiP64548.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75652; AAC75652; b2603.
BAE76756; BAE76756; BAE76756.
GeneIDi947090.
KEGGiecj:JW2584.
eco:b2603.
PATRICi32120605. VBIEscCol129921_2701.

Organism-specific databases

EchoBASEiEB3977.
EcoGeneiEG14225. yfiR.

Phylogenomic databases

eggNOGiENOG4108WS1. Bacteria.
ENOG4111MUY. LUCA.
HOGENOMiHOG000217427.
InParanoidiP64548.
OMAiEADDPCT.
OrthoDBiEOG6RFZXH.

Enzyme and pathway databases

BioCyciEcoCyc:G7354-MONOMER.
ECOL316407:JW2584-MONOMER.

Miscellaneous databases

PROiP64548.

Family and domain databases

InterProiIPR025293. DUF4154.
[Graphical view]
PfamiPF13689. DUF4154. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYFIR_ECOLI
AccessioniPrimary (citable) accession number: P64548
Secondary accession number(s): P76597, Q2MAF0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: January 20, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.