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Protein

Uncharacterized protein YodD

Gene

yodD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • cellular response to acidic pH Source: EcoCyc
  • cellular response to hydrogen peroxide Source: EcoCyc
  • single-species biofilm formation on inanimate substrate Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7046-MONOMER.
ECOL316407:JW5317-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YodD
Gene namesi
Name:yodD
Ordered Locus Names:b1953, JW5317
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14387. yodD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001691041 – 75Uncharacterized protein YodDAdd BLAST75

Proteomic databases

PaxDbiP64519.
PRIDEiP64519.

Interactioni

Protein-protein interaction databases

BioGridi4261049. 10 interactors.
DIPiDIP-48227N.
IntActiP64519. 2 interactors.
STRINGi511145.b1953.

Structurei

3D structure databases

ProteinModelPortaliP64519.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105YX3. Bacteria.
ENOG411261I. LUCA.
HOGENOMiHOG000267963.
OMAiGRGSHTW.

Family and domain databases

InterProiIPR019669. Uncharacterised_YodD.
[Graphical view]
PfamiPF10733. DUF2525. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P64519-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTAKEYSDT AKREVSVDVD ALLAAINEIS ESEVHRSQND SEHVSVDGRE
60 70
YHTWRELADA FELDIHDFSV SEVNR
Length:75
Mass (Da):8,579
Last modified:October 11, 2004 - v1
Checksum:iFB24604CA92BDA4D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75020.2.
AP009048 Genomic DNA. Translation: BAE76554.1.
RefSeqiNP_416463.4. NC_000913.3.
WP_000844800.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75020; AAC75020; b1953.
BAE76554; BAE76554; BAE76554.
GeneIDi946469.
KEGGiecj:JW5317.
eco:b1953.
PATRICi32119235. VBIEscCol129921_2032.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75020.2.
AP009048 Genomic DNA. Translation: BAE76554.1.
RefSeqiNP_416463.4. NC_000913.3.
WP_000844800.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64519.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261049. 10 interactors.
DIPiDIP-48227N.
IntActiP64519. 2 interactors.
STRINGi511145.b1953.

Proteomic databases

PaxDbiP64519.
PRIDEiP64519.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75020; AAC75020; b1953.
BAE76554; BAE76554; BAE76554.
GeneIDi946469.
KEGGiecj:JW5317.
eco:b1953.
PATRICi32119235. VBIEscCol129921_2032.

Organism-specific databases

EchoBASEiEB4130.
EcoGeneiEG14387. yodD.

Phylogenomic databases

eggNOGiENOG4105YX3. Bacteria.
ENOG411261I. LUCA.
HOGENOMiHOG000267963.
OMAiGRGSHTW.

Enzyme and pathway databases

BioCyciEcoCyc:G7046-MONOMER.
ECOL316407:JW5317-MONOMER.

Miscellaneous databases

PROiP64519.

Family and domain databases

InterProiIPR019669. Uncharacterised_YodD.
[Graphical view]
PfamiPF10733. DUF2525. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYODD_ECOLI
AccessioniPrimary (citable) accession number: P64519
Secondary accession number(s): P76328, Q2MB02
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.