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Protein

Inner membrane protein YdjM

Gene

ydjM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
  • SOS response Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6933-MONOMER.
ECOL316407:JW5281-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YdjM
Gene namesi
Name:ydjM
Ordered Locus Names:b1728, JW5281
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13989. ydjM.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 23PeriplasmicSequence analysisAdd BLAST23
Transmembranei24 – 44HelicalSequence analysisAdd BLAST21
Topological domaini45 – 77CytoplasmicSequence analysisAdd BLAST33
Transmembranei78 – 98HelicalSequence analysisAdd BLAST21
Topological domaini99 – 106PeriplasmicSequence analysis8
Transmembranei107 – 127HelicalSequence analysisAdd BLAST21
Topological domaini128 – 149CytoplasmicSequence analysisAdd BLAST22
Transmembranei150 – 170HelicalSequence analysisAdd BLAST21
Topological domaini171 – 196PeriplasmicSequence analysisAdd BLAST26

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000138571 – 196Inner membrane protein YdjMAdd BLAST196

Proteomic databases

PaxDbiP64481.
PRIDEiP64481.

Interactioni

Protein-protein interaction databases

BioGridi4261487. 66 interactors.
STRINGi511145.b1728.

Structurei

3D structure databases

ProteinModelPortaliP64481.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To B.subtilis YvsG.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107K5X. Bacteria.
COG1988. LUCA.
HOGENOMiHOG000271292.
InParanoidiP64481.
KOiK07038.
PhylomeDBiP64481.

Family and domain databases

InterProiIPR016956. YdjM.
IPR007404. YdjM-like.
[Graphical view]
PfamiPF04307. YdjM. 1 hit.
[Graphical view]
PIRSFiPIRSF030780. Md_memb_hyd_prd. 1 hit.

Sequencei

Sequence statusi: Complete.

P64481-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAEGHLLFS IACAVFAKNA ELTPVLAQGD WWHIVPSAIL TCLLPDIDHP
60 70 80 90 100
KSFLGQRLKW ISKPIARAFG HRGFTHSLLA VFALLATFYL KVPEGWFIPA
110 120 130 140 150
DALQGMVLGY LSHILADMLT PAGVPLLWPC RWRFRLPILV PQKGNQLERF
160 170 180 190
ICMALFVWSV WMPHSLPENS AVRWSSQMIN TLQIQFHRLI KHQVEY
Length:196
Mass (Da):22,350
Last modified:November 24, 2009 - v2
Checksum:i9CB6F59FAD010235
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74798.4.
AP009048 Genomic DNA. Translation: BAE76511.1.
PIRiH64931.
RefSeqiNP_416242.6. NC_000913.3.
WP_001297653.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74798; AAC74798; b1728.
BAE76511; BAE76511; BAE76511.
GeneIDi945644.
KEGGiecj:JW5281.
eco:b1728.
PATRICi32118763. VBIEscCol129921_1799.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74798.4.
AP009048 Genomic DNA. Translation: BAE76511.1.
PIRiH64931.
RefSeqiNP_416242.6. NC_000913.3.
WP_001297653.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64481.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261487. 66 interactors.
STRINGi511145.b1728.

Proteomic databases

PaxDbiP64481.
PRIDEiP64481.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74798; AAC74798; b1728.
BAE76511; BAE76511; BAE76511.
GeneIDi945644.
KEGGiecj:JW5281.
eco:b1728.
PATRICi32118763. VBIEscCol129921_1799.

Organism-specific databases

EchoBASEiEB3745.
EcoGeneiEG13989. ydjM.

Phylogenomic databases

eggNOGiENOG4107K5X. Bacteria.
COG1988. LUCA.
HOGENOMiHOG000271292.
InParanoidiP64481.
KOiK07038.
PhylomeDBiP64481.

Enzyme and pathway databases

BioCyciEcoCyc:G6933-MONOMER.
ECOL316407:JW5281-MONOMER.

Miscellaneous databases

PROiP64481.

Family and domain databases

InterProiIPR016956. YdjM.
IPR007404. YdjM-like.
[Graphical view]
PfamiPF04307. YdjM. 1 hit.
[Graphical view]
PIRSFiPIRSF030780. Md_memb_hyd_prd. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDJM_ECOLI
AccessioniPrimary (citable) accession number: P64481
Secondary accession number(s): P76209, Q2MB45
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: November 24, 2009
Last modified: November 2, 2016
This is version 89 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.