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Protein

Putative selenoprotein YdfZ

Gene

ydfZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Keywords - Ligandi

Selenium

Enzyme and pathway databases

BioCyciEcoCyc:G6815-MONOMER.
ECOL316407:JW1534-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative selenoprotein YdfZ
Gene namesi
Name:ydfZ
Ordered Locus Names:b1541, JW1534
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13838. ydfZ.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689631 – 67Putative selenoprotein YdfZAdd BLAST67

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei52S-selanylcysteineSequence analysis1

Proteomic databases

PaxDbiP64463.
PRIDEiP64463.

Interactioni

Protein-protein interaction databases

BioGridi4261738. 7 interactors.
DIPiDIP-48219N.
IntActiP64463. 12 interactors.
STRINGi511145.b1541.

Structurei

3D structure databases

ProteinModelPortaliP64463.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG41061EV. Bacteria.
ENOG41126WX. LUCA.
HOGENOMiHOG000269957.
OMAiCEGKFEP.

Family and domain databases

InterProiIPR017704. Se-bd_putative_YdfZ.
[Graphical view]
PfamiPF14001. YdfZ. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03318. YdfZ_fam. 1 hit.

Sequencei

Sequence statusi: Complete.

P64463-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTYDRNRNA ITTGSRVMVS GTGHTGKILS IDTEGLTAEQ IRRGKTVVVE
60
GCEEKLAPLD LIRLGMN
Length:67
Mass (Da):7,276
Last modified:October 11, 2004 - v1
Checksum:iCF996187C82C8021
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74614.1.
AP009048 Genomic DNA. Translation: BAE76463.1.
PIRiH64908.
RefSeqiNP_416059.1. NC_000913.3.
WP_000214712.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74614; AAC74614; b1541.
BAE76463; BAE76463; BAE76463.
GeneIDi948796.
KEGGiecj:JW1534.
eco:b1541.
PATRICi32118382. VBIEscCol129921_1611.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74614.1.
AP009048 Genomic DNA. Translation: BAE76463.1.
PIRiH64908.
RefSeqiNP_416059.1. NC_000913.3.
WP_000214712.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64463.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261738. 7 interactors.
DIPiDIP-48219N.
IntActiP64463. 12 interactors.
STRINGi511145.b1541.

Proteomic databases

PaxDbiP64463.
PRIDEiP64463.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74614; AAC74614; b1541.
BAE76463; BAE76463; BAE76463.
GeneIDi948796.
KEGGiecj:JW1534.
eco:b1541.
PATRICi32118382. VBIEscCol129921_1611.

Organism-specific databases

EchoBASEiEB3599.
EcoGeneiEG13838. ydfZ.

Phylogenomic databases

eggNOGiENOG41061EV. Bacteria.
ENOG41126WX. LUCA.
HOGENOMiHOG000269957.
OMAiCEGKFEP.

Enzyme and pathway databases

BioCyciEcoCyc:G6815-MONOMER.
ECOL316407:JW1534-MONOMER.

Miscellaneous databases

PROiP64463.

Family and domain databases

InterProiIPR017704. Se-bd_putative_YdfZ.
[Graphical view]
PfamiPF14001. YdfZ. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03318. YdfZ_fam. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDFZ_ECOLI
AccessioniPrimary (citable) accession number: P64463
Secondary accession number(s): P76153, Q2MB93
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.