P64439 (YBJM_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Inner membrane protein YbjM

Gene names

Name:	ybjM
Ordered Locus Names:	b0848, JW0832

Organism

Escherichia coli (strain K12) [Reference proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	125 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Subcellular location

Cell inner membrane; Multi-pass membrane protein.

Ontologies

Keywords
Cellular component	Cell inner membrane Cell membrane Membrane
Domain	Transmembrane Transmembrane helix
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 125	125	Inner membrane protein YbjM		PRO_0000168740
Regions
	Topological domain	1 – 6	6	Cytoplasmic Potential
	Transmembrane	7 – 27	21	Helical; Potential
	Topological domain	28 – 34	7	Periplasmic Potential
	Transmembrane	35 – 55	21	Helical; Potential
	Topological domain	56 – 64	9	Cytoplasmic Potential
	Transmembrane	65 – 85	21	Helical; Potential
	Topological domain	86 – 92	7	Periplasmic Potential
	Transmembrane	93 – 113	21	Helical; Potential
	Topological domain	114 – 125	12	Cytoplasmic Potential

Sequences

	Sequence		Length	Mass (Da)
	P64439 [UniParc]. Last modified October 11, 2004. Version 1. Checksum: 96D52CF35F1B13C1	FASTA	125	14,203
	10 20 30 40 50 60 MKHKQRWAGA ICCFVLFIVV CLFLATHMKG AFRAAGHPEI GLLFFILPGA VASFFSQRRE 70 80 90 100 110 120 VLKPLFGAML AAPCSMLIMR LFFSPTRSFW QELAWLLSAV FWCALGALCF LFISSLFKPQ HRKNQ

References

[1]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[2]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]	"Global topology analysis of the Escherichia coli inner membrane proteome." Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G. Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract] Cited for: TOPOLOGY [LARGE SCALE ANALYSIS]. Strain: K12 / MG1655 / ATCC 47076.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00096 Genomic DNA. Translation: AAC73935.1. AP009048 Genomic DNA. Translation: BAE76367.1.
PIR	H64822.
RefSeq	NP_415369.1. NC_000913.2. YP_489121.1. NC_007779.1.
3D structure databases
ProteinModelPortal	P64439.
ModBase	Search...
Protein-protein interaction databases
STRING	511145.b0848.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAC73935; AAC73935; b0848. BAE76367; BAE76367; BAE76367.
GeneID	12931808. 945477.
KEGG	ecj:Y75_p0821. eco:b0848.
PATRIC	32116901. VBIEscCol129921_0876.
Organism-specific databases
EchoBASE	EB3446.
EcoGene	EG13682. ybjM.
Phylogenomic databases
eggNOG	NOG12234.
HOGENOM	HOG000118227.
OMA	LWQELAW.
ProtClustDB	CLSK879792.
Enzyme and pathway databases
BioCyc	EcoCyc:G6446-MONOMER. ECOL316407:JW0832-MONOMER.
Gene expression databases
Genevestigator	P64439.
Family and domain databases
InterPro	IPR020368. Uncharacterised_YbjM. [Graphical view]
Pfam	PF11045. YbjM. 1 hit. [Graphical view]
ProDom	PD079046. Inner_membrane_protein_YbjM. 1 hit. [Graphical view] [Entries sharing at least one domain]
ProtoNet	Search...

Entry information

Entry name

YBJM_ECOLI

Accession

Primary (citable) accession number: P64439
Secondary accession number(s): P75813, Q2MBI9

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 11, 2004
Last sequence update:	October 11, 2004
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program