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Protein

Inner membrane protein YbjM

Gene

ybjM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6446-MONOMER.
ECOL316407:JW0832-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbjM
Gene namesi
Name:ybjM
Ordered Locus Names:b0848, JW0832
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13682. ybjM.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 6CytoplasmicSequence analysis6
Transmembranei7 – 27HelicalSequence analysisAdd BLAST21
Topological domaini28 – 34PeriplasmicSequence analysis7
Transmembranei35 – 55HelicalSequence analysisAdd BLAST21
Topological domaini56 – 64CytoplasmicSequence analysis9
Transmembranei65 – 85HelicalSequence analysisAdd BLAST21
Topological domaini86 – 92PeriplasmicSequence analysis7
Transmembranei93 – 113HelicalSequence analysisAdd BLAST21
Topological domaini114 – 125CytoplasmicSequence analysisAdd BLAST12

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001687401 – 125Inner membrane protein YbjMAdd BLAST125

Proteomic databases

PaxDbiP64439.
PRIDEiP64439.

Interactioni

Protein-protein interaction databases

BioGridi4260802. 12 interactors.
IntActiP64439. 4 interactors.
STRINGi511145.b0848.

Structurei

3D structure databases

ProteinModelPortaliP64439.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105GWF. Bacteria.
ENOG4111P9N. LUCA.
HOGENOMiHOG000118227.
OMAiNTPMRSF.

Family and domain databases

InterProiIPR020368. Uncharacterised_YbjM.
[Graphical view]
PfamiPF11045. YbjM. 1 hit.
[Graphical view]
ProDomiPD079046. Inner_membrane_protein_YbjM. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P64439-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHKQRWAGA ICCFVLFIVV CLFLATHMKG AFRAAGHPEI GLLFFILPGA
60 70 80 90 100
VASFFSQRRE VLKPLFGAML AAPCSMLIMR LFFSPTRSFW QELAWLLSAV
110 120
FWCALGALCF LFISSLFKPQ HRKNQ
Length:125
Mass (Da):14,203
Last modified:October 11, 2004 - v1
Checksum:i96D52CF35F1B13C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73935.1.
AP009048 Genomic DNA. Translation: BAE76367.1.
PIRiH64822.
RefSeqiNP_415369.1. NC_000913.3.
WP_000681108.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73935; AAC73935; b0848.
BAE76367; BAE76367; BAE76367.
GeneIDi945477.
KEGGiecj:JW0832.
eco:b0848.
PATRICi32116901. VBIEscCol129921_0876.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73935.1.
AP009048 Genomic DNA. Translation: BAE76367.1.
PIRiH64822.
RefSeqiNP_415369.1. NC_000913.3.
WP_000681108.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64439.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260802. 12 interactors.
IntActiP64439. 4 interactors.
STRINGi511145.b0848.

Proteomic databases

PaxDbiP64439.
PRIDEiP64439.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73935; AAC73935; b0848.
BAE76367; BAE76367; BAE76367.
GeneIDi945477.
KEGGiecj:JW0832.
eco:b0848.
PATRICi32116901. VBIEscCol129921_0876.

Organism-specific databases

EchoBASEiEB3446.
EcoGeneiEG13682. ybjM.

Phylogenomic databases

eggNOGiENOG4105GWF. Bacteria.
ENOG4111P9N. LUCA.
HOGENOMiHOG000118227.
OMAiNTPMRSF.

Enzyme and pathway databases

BioCyciEcoCyc:G6446-MONOMER.
ECOL316407:JW0832-MONOMER.

Miscellaneous databases

PROiP64439.

Family and domain databases

InterProiIPR020368. Uncharacterised_YbjM.
[Graphical view]
PfamiPF11045. YbjM. 1 hit.
[Graphical view]
ProDomiPD079046. Inner_membrane_protein_YbjM. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiYBJM_ECOLI
AccessioniPrimary (citable) accession number: P64439
Secondary accession number(s): P75813, Q2MBI9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.