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Protein

Inner membrane protein YbjM

Gene

ybjM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6446-MONOMER.
ECOL316407:JW0832-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YbjM
Gene namesi
Name:ybjM
Ordered Locus Names:b0848, JW0832
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13682. ybjM.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 66CytoplasmicSequence analysis
Transmembranei7 – 2721HelicalSequence analysisAdd
BLAST
Topological domaini28 – 347PeriplasmicSequence analysis
Transmembranei35 – 5521HelicalSequence analysisAdd
BLAST
Topological domaini56 – 649CytoplasmicSequence analysis
Transmembranei65 – 8521HelicalSequence analysisAdd
BLAST
Topological domaini86 – 927PeriplasmicSequence analysis
Transmembranei93 – 11321HelicalSequence analysisAdd
BLAST
Topological domaini114 – 12512CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 125125Inner membrane protein YbjMPRO_0000168740Add
BLAST

Proteomic databases

PaxDbiP64439.

Interactioni

Protein-protein interaction databases

BioGridi4260802. 12 interactions.
IntActiP64439. 4 interactions.
STRINGi511145.b0848.

Structurei

3D structure databases

ProteinModelPortaliP64439.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105GWF. Bacteria.
ENOG4111P9N. LUCA.
HOGENOMiHOG000118227.
OMAiNTPMRSF.
OrthoDBiEOG618QTQ.

Family and domain databases

InterProiIPR020368. Uncharacterised_YbjM.
[Graphical view]
PfamiPF11045. YbjM. 1 hit.
[Graphical view]
ProDomiPD079046. Inner_membrane_protein_YbjM. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P64439-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHKQRWAGA ICCFVLFIVV CLFLATHMKG AFRAAGHPEI GLLFFILPGA
60 70 80 90 100
VASFFSQRRE VLKPLFGAML AAPCSMLIMR LFFSPTRSFW QELAWLLSAV
110 120
FWCALGALCF LFISSLFKPQ HRKNQ
Length:125
Mass (Da):14,203
Last modified:October 11, 2004 - v1
Checksum:i96D52CF35F1B13C1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73935.1.
AP009048 Genomic DNA. Translation: BAE76367.1.
PIRiH64822.
RefSeqiNP_415369.1. NC_000913.3.
WP_000681108.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73935; AAC73935; b0848.
BAE76367; BAE76367; BAE76367.
GeneIDi945477.
KEGGiecj:JW0832.
eco:b0848.
PATRICi32116901. VBIEscCol129921_0876.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC73935.1.
AP009048 Genomic DNA. Translation: BAE76367.1.
PIRiH64822.
RefSeqiNP_415369.1. NC_000913.3.
WP_000681108.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64439.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260802. 12 interactions.
IntActiP64439. 4 interactions.
STRINGi511145.b0848.

Proteomic databases

PaxDbiP64439.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73935; AAC73935; b0848.
BAE76367; BAE76367; BAE76367.
GeneIDi945477.
KEGGiecj:JW0832.
eco:b0848.
PATRICi32116901. VBIEscCol129921_0876.

Organism-specific databases

EchoBASEiEB3446.
EcoGeneiEG13682. ybjM.

Phylogenomic databases

eggNOGiENOG4105GWF. Bacteria.
ENOG4111P9N. LUCA.
HOGENOMiHOG000118227.
OMAiNTPMRSF.
OrthoDBiEOG618QTQ.

Enzyme and pathway databases

BioCyciEcoCyc:G6446-MONOMER.
ECOL316407:JW0832-MONOMER.

Miscellaneous databases

PROiP64439.

Family and domain databases

InterProiIPR020368. Uncharacterised_YbjM.
[Graphical view]
PfamiPF11045. YbjM. 1 hit.
[Graphical view]
ProDomiPD079046. Inner_membrane_protein_YbjM. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYBJM_ECOLI
AccessioniPrimary (citable) accession number: P64439
Secondary accession number(s): P75813, Q2MBI9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: January 20, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.