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Protein

Inner membrane protein YpjD

Gene

ypjD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7355-MONOMER.
ECOL316407:JW2592-MONOMER.

Protein family/group databases

TCDBi9.B.14.3.6. the putative heme handling protein (hhp) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YpjD
Gene namesi
Name:ypjD
Ordered Locus Names:b2611, JW2592
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14226. ypjD.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 33PeriplasmicSequence analysis
Transmembranei4 – 2320HelicalSequence analysisAdd
BLAST
Topological domaini24 – 3411CytoplasmicSequence analysisAdd
BLAST
Transmembranei35 – 5420HelicalSequence analysisAdd
BLAST
Topological domaini55 – 639PeriplasmicSequence analysis
Transmembranei64 – 8320HelicalSequence analysisAdd
BLAST
Topological domaini84 – 896CytoplasmicSequence analysis
Transmembranei90 – 10920HelicalSequence analysisAdd
BLAST
Topological domaini110 – 12314PeriplasmicSequence analysisAdd
BLAST
Transmembranei124 – 14623HelicalSequence analysisAdd
BLAST
Topological domaini147 – 18135CytoplasmicSequence analysisAdd
BLAST
Transmembranei182 – 20120HelicalSequence analysisAdd
BLAST
Topological domaini202 – 2109PeriplasmicSequence analysis
Transmembranei211 – 22818HelicalSequence analysisAdd
BLAST
Topological domaini229 – 2368CytoplasmicSequence analysis
Transmembranei237 – 25923HelicalSequence analysisAdd
BLAST
Topological domaini260 – 2634PeriplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 263263Inner membrane protein YpjDPRO_0000201343Add
BLAST

Proteomic databases

PaxDbiP64432.

Interactioni

Protein-protein interaction databases

BioGridi4260614. 16 interactions.
STRINGi511145.b2611.

Structurei

3D structure databases

ProteinModelPortaliP64432.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4106KVJ. Bacteria.
COG4137. LUCA.
HOGENOMiHOG000255940.
InParanoidiP64432.
OMAiMPPLMTV.

Family and domain databases

InterProiIPR002541. Cyt_c_assembly.
[Graphical view]
PfamiPF01578. Cytochrom_C_asm. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P64432-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPVFALLALV AYSVSLALIV PGLLQKNGGW RRMAIISAVI ALVCHAIALE
60 70 80 90 100
ARILPDGDSG QNLSLLNVGS LVSLMICTVM TIVASRNRGW LLLPIVYAFA
110 120 130 140 150
LINLALATFM PNEYITHLEA TPGMLVHIGL SLFSYATLII AALYALQLAW
160 170 180 190 200
IDYQLKNKKL AFNQEMPPLM SIERKMFHIT QIGVVLLTLT LCTGLFYMHN
210 220 230 240 250
LFSMENIDKA VLSIVAWFVY IVLLWGHYHE GWRGRRVVWF NVAGAVILTL
260
AYFGSRIVQQ LIS
Length:263
Mass (Da):29,262
Last modified:October 11, 2004 - v1
Checksum:iBC37422CB8479D0A
GO

Sequence cautioni

The sequence BAE76757 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75660.2.
AP009048 Genomic DNA. Translation: BAE76757.1. Different initiation.
PIRiF65039.
RefSeqiNP_417102.4. NC_000913.3.
WP_001338897.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75660; AAC75660; b2611.
BAE76757; BAE76757; BAE76757.
GeneIDi947098.
KEGGiecj:JW2592.
eco:b2611.
PATRICi32120621. VBIEscCol129921_2709.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75660.2.
AP009048 Genomic DNA. Translation: BAE76757.1. Different initiation.
PIRiF65039.
RefSeqiNP_417102.4. NC_000913.3.
WP_001338897.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64432.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260614. 16 interactions.
STRINGi511145.b2611.

Protein family/group databases

TCDBi9.B.14.3.6. the putative heme handling protein (hhp) family.

Proteomic databases

PaxDbiP64432.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75660; AAC75660; b2611.
BAE76757; BAE76757; BAE76757.
GeneIDi947098.
KEGGiecj:JW2592.
eco:b2611.
PATRICi32120621. VBIEscCol129921_2709.

Organism-specific databases

EchoBASEiEB3978.
EcoGeneiEG14226. ypjD.

Phylogenomic databases

eggNOGiENOG4106KVJ. Bacteria.
COG4137. LUCA.
HOGENOMiHOG000255940.
InParanoidiP64432.
OMAiMPPLMTV.

Enzyme and pathway databases

BioCyciEcoCyc:G7355-MONOMER.
ECOL316407:JW2592-MONOMER.

Miscellaneous databases

PROiP64432.

Family and domain databases

InterProiIPR002541. Cyt_c_assembly.
[Graphical view]
PfamiPF01578. Cytochrom_C_asm. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYPJD_ECOLI
AccessioniPrimary (citable) accession number: P64432
Secondary accession number(s): P76599, Q2MAE9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: September 7, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.