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Protein

Uncharacterized protein YpfJ

Gene

ypfJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7298-MONOMER.
ECOL316407:JW2460-MONOMER.
RETL1328306-WGS:GSTH-3000-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YpfJ
Gene namesi
Name:ypfJ
Ordered Locus Names:b2475, JW2460
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14197. ypfJ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei38 – 6023HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 287287Uncharacterized protein YpfJPRO_0000201340Add
BLAST

Proteomic databases

PaxDbiP64429.
PRIDEiP64429.

Interactioni

Protein-protein interaction databases

BioGridi4260581. 4 interactions.
DIPiDIP-48230N.
STRINGi511145.b2475.

Structurei

3D structure databases

ProteinModelPortaliP64429.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CGZ. Bacteria.
COG2321. LUCA.
HOGENOMiHOG000210564.
InParanoidiP64429.
KOiK07054.
OMAiQKRSQGY.
OrthoDBiEOG610455.
PhylomeDBiP64429.

Family and domain databases

InterProiIPR007343. Uncharacterised_pept_Zn_put.
[Graphical view]
PfamiPF04228. Zn_peptidase. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P64429-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRWQGRRESD NVEDRRNSSG GPSMGGPGFR LPSGKGGLIL LIVVLVAGYY
60 70 80 90 100
GVDLTGLMTG QPVSQQQSTR SISPNEDEAA KFTSVILATT EDTWGQQFEK
110 120 130 140 150
MGKTYQQPKL VMYRGMTRTG CGAGQSIMGP FYCPADGTVY IDLSFYDDMK
160 170 180 190 200
DKLGADGDFA QGYVIAHEVG HHVQKLLGIE PKVRQLQQNA TQAEVNRLSV
210 220 230 240 250
RMELQADCFA GVWGHSMQQQ GVLETGDLEE ALNAAQAIGD DRLQQQSQGR
260 270 280
VVPDSFTHGT SQQRYSWFKR GFDSGDPAQC NTFGKSI
Length:287
Mass (Da):31,460
Last modified:October 11, 2004 - v1
Checksum:iA5EEA712056B92A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75528.1.
AP009048 Genomic DNA. Translation: BAE76723.1.
PIRiB65023.
RefSeqiNP_416970.1. NC_000913.3.
WP_001267498.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75528; AAC75528; b2475.
BAE76723; BAE76723; BAE76723.
GeneIDi946956.
KEGGiecj:JW2460.
eco:b2475.
PATRICi32120335. VBIEscCol129921_2570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75528.1.
AP009048 Genomic DNA. Translation: BAE76723.1.
PIRiB65023.
RefSeqiNP_416970.1. NC_000913.3.
WP_001267498.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP64429.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260581. 4 interactions.
DIPiDIP-48230N.
STRINGi511145.b2475.

Proteomic databases

PaxDbiP64429.
PRIDEiP64429.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75528; AAC75528; b2475.
BAE76723; BAE76723; BAE76723.
GeneIDi946956.
KEGGiecj:JW2460.
eco:b2475.
PATRICi32120335. VBIEscCol129921_2570.

Organism-specific databases

EchoBASEiEB3949.
EcoGeneiEG14197. ypfJ.

Phylogenomic databases

eggNOGiENOG4105CGZ. Bacteria.
COG2321. LUCA.
HOGENOMiHOG000210564.
InParanoidiP64429.
KOiK07054.
OMAiQKRSQGY.
OrthoDBiEOG610455.
PhylomeDBiP64429.

Enzyme and pathway databases

BioCyciEcoCyc:G7298-MONOMER.
ECOL316407:JW2460-MONOMER.
RETL1328306-WGS:GSTH-3000-MONOMER.

Miscellaneous databases

PROiP64429.

Family and domain databases

InterProiIPR007343. Uncharacterised_pept_Zn_put.
[Graphical view]
PfamiPF04228. Zn_peptidase. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYPFJ_ECOLI
AccessioniPrimary (citable) accession number: P64429
Secondary accession number(s): P76563, Q2MAI3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: January 20, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.