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Protein

Peptide deformylase-like

Gene

def

Organism
Brucella suis biovar 1 (strain 1330)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei134 – 1341By similarity

GO - Molecular functioni

  1. iron ion binding Source: InterPro
  2. peptide deformylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Peptide deformylase-like
Alternative name(s):
Polypeptide deformylase-like
Gene namesi
Name:def
Ordered Locus Names:BRA0454, BS1330_II0451
OrganismiBrucella suis biovar 1 (strain 1330)
Taxonomic identifieri204722 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000824: Chromosome II, UP000007104: Chromosome II

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 164164Peptide deformylase-likePRO_0000082893Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi204722.BRA0454.

Structurei

3D structure databases

ProteinModelPortaliP63920.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the polypeptide deformylase family.Curated

Phylogenomic databases

eggNOGiCOG0242.
HOGENOMiHOG000243509.
KOiK01462.
OMAiTIWGEPV.
OrthoDBiEOG664CMF.

Family and domain databases

Gene3Di3.90.45.10. 1 hit.
HAMAPiMF_00163. Pep_deformylase.
InterProiIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
PANTHERiPTHR10458. PTHR10458. 1 hit.
PfamiPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFiPIRSF004749. Pep_def. 1 hit.
PRINTSiPR01576. PDEFORMYLASE.
SUPFAMiSSF56420. SSF56420. 1 hit.
TIGRFAMsiTIGR00079. pept_deformyl. 1 hit.

Sequencei

Sequence statusi: Complete.

P63920-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVRLIVKYP DPRLRAAAEP VTTFDEGLRK LADDLLDTMR AAPGIGITAP
60 70 80 90 100
HIGISKRVVV LELDRAAGPK IYINPEIVWA CEEKIRHQEG SVSMPGVVDE
110 120 130 140 150
VERHARIRLR YQDLDGNEQT EESDGLLAVC HQHEIDQLDG IFWVQRLSRL
160
RRERLIKRYE KLQR
Length:164
Mass (Da):18,857
Last modified:October 11, 2004 - v1
Checksum:iBA2B8C3F9C4E766C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014292 Genomic DNA. Translation: AAN33648.1.
CP002998 Genomic DNA. Translation: AEM19927.1.
RefSeqiNP_699643.1. NC_004311.2.
YP_005614153.1. NC_017250.1.

Genome annotation databases

EnsemblBacteriaiAAN33648; AAN33648; BRA0454.
AEM19927; AEM19927; BS1330_II0451.
GeneIDi1164892.
12139886.
KEGGibms:BRA0454.
bsi:BS1330_II0451.
PATRICi17793713. VBIBruSui107850_2672.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014292 Genomic DNA. Translation: AAN33648.1.
CP002998 Genomic DNA. Translation: AEM19927.1.
RefSeqiNP_699643.1. NC_004311.2.
YP_005614153.1. NC_017250.1.

3D structure databases

ProteinModelPortaliP63920.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi204722.BRA0454.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN33648; AAN33648; BRA0454.
AEM19927; AEM19927; BS1330_II0451.
GeneIDi1164892.
12139886.
KEGGibms:BRA0454.
bsi:BS1330_II0451.
PATRICi17793713. VBIBruSui107850_2672.

Phylogenomic databases

eggNOGiCOG0242.
HOGENOMiHOG000243509.
KOiK01462.
OMAiTIWGEPV.
OrthoDBiEOG664CMF.

Family and domain databases

Gene3Di3.90.45.10. 1 hit.
HAMAPiMF_00163. Pep_deformylase.
InterProiIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
PANTHERiPTHR10458. PTHR10458. 1 hit.
PfamiPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFiPIRSF004749. Pep_def. 1 hit.
PRINTSiPR01576. PDEFORMYLASE.
SUPFAMiSSF56420. SSF56420. 1 hit.
TIGRFAMsiTIGR00079. pept_deformyl. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1330.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 1330.

Entry informationi

Entry nameiDEFL_BRUSU
AccessioniPrimary (citable) accession number: P63920
Secondary accession number(s): G0KCI9, Q8YBS4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 11, 2004
Last sequence update: October 11, 2004
Last modified: January 7, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella suis
    Brucella suis (strain 1330): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.