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P63237

- CSPE_BUCAI

UniProt

P63237 - CSPE_BUCAI

Protein

Cold shock-like protein CspE

Gene

cspE

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: UniProtKB-KW
    2. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Activator

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Enzyme and pathway databases

    BioCyciBAPH107806:GBZJ-489-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Cold shock-like protein CspE
    Short name:
    CSP-E
    Gene namesi
    Name:cspE
    Ordered Locus Names:BU489
    OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
    Taxonomic identifieri107806 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000001806: Chromosome

    Subcellular locationi

    Cytoplasm By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 6968Cold shock-like protein CspEPRO_0000100257Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliP63237.
    SMRiP63237. Positions 3-69.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini6 – 6661CSDAdd
    BLAST

    Sequence similaritiesi

    Contains 1 CSD (cold-shock) domain.Curated

    Phylogenomic databases

    eggNOGiCOG1278.
    HOGENOMiHOG000070674.
    KOiK03704.
    OMAiVECITAT.
    OrthoDBiEOG618R0J.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR019844. Cold-shock_CS.
    IPR012156. Cold_shock_CspA.
    IPR011129. Cold_shock_prot.
    IPR002059. CSP_DNA-bd.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF00313. CSD. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002599. Cold_shock_A. 1 hit.
    PRINTSiPR00050. COLDSHOCK.
    SMARTiSM00357. CSP. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00352. COLD_SHOCK. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P63237-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSKIKGNVKW FNESKGFGFI TPEDGSKDVF VHFSAIQSNG FKTLAEGQSV   50
    EFEITEGAKG PSAANVISL 69
    Length:69
    Mass (Da):7,411
    Last modified:January 23, 2007 - v2
    Checksum:i5D6EB920AB50D75B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB13185.1.
    RefSeqiNP_240299.1. NC_002528.1.

    Genome annotation databases

    EnsemblBacteriaiBAB13185; BAB13185; BAB13185.
    GeneIDi1109835.
    KEGGibuc:BU489.
    PATRICi21244520. VBIBucAph127364_0497.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB13185.1 .
    RefSeqi NP_240299.1. NC_002528.1.

    3D structure databases

    ProteinModelPortali P63237.
    SMRi P63237. Positions 3-69.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAB13185 ; BAB13185 ; BAB13185 .
    GeneIDi 1109835.
    KEGGi buc:BU489.
    PATRICi 21244520. VBIBucAph127364_0497.

    Phylogenomic databases

    eggNOGi COG1278.
    HOGENOMi HOG000070674.
    KOi K03704.
    OMAi VECITAT.
    OrthoDBi EOG618R0J.

    Enzyme and pathway databases

    BioCyci BAPH107806:GBZJ-489-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR019844. Cold-shock_CS.
    IPR012156. Cold_shock_CspA.
    IPR011129. Cold_shock_prot.
    IPR002059. CSP_DNA-bd.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF00313. CSD. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002599. Cold_shock_A. 1 hit.
    PRINTSi PR00050. COLDSHOCK.
    SMARTi SM00357. CSP. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00352. COLD_SHOCK. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
      Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
      Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: APS.

    Entry informationi

    Entry nameiCSPE_BUCAI
    AccessioniPrimary (citable) accession number: P63237
    Secondary accession number(s): P57560
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 11, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 63 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
      Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3