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Protein

60S ribosomal protein L38

Gene

Rpl38

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L38
Gene namesi
Name:Rpl38
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 14, Chromosome 16, Chromosome 2, Chromosome 3, Chromosome 8

Organism-specific databases

RGDi1305573. Rpl38.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00002154372 – 7060S ribosomal protein L38Add BLAST69

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei9N6-acetyllysineBy similarity1
Modified residuei67N6-acetyllysineBy similarity1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP63174.
PRIDEiP63174.

PTM databases

iPTMnetiP63174.
PhosphoSitePlusiP63174.

Expressioni

Gene expression databases

BgeeiENSRNOG00000029377.
ExpressionAtlasiP63174. differential.
GenevisibleiP63174. RN.

Interactioni

Protein-protein interaction databases

MINTiMINT-4579733.
STRINGi10116.ENSRNOP00000050353.

Structurei

3D structure databases

ProteinModelPortaliP63174.
SMRiP63174.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L38e family.Curated

Phylogenomic databases

eggNOGiKOG3499. Eukaryota.
ENOG4112229. LUCA.
GeneTreeiENSGT00390000003718.
HOGENOMiHOG000188979.
HOVERGENiHBG001013.
InParanoidiP63174.
KOiK02923.
OMAiLYTLVIQ.
OrthoDBiEOG091G0SPL.
PhylomeDBiP63174.
TreeFamiTF300215.

Family and domain databases

InterProiIPR002675. Ribosomal_L38e.
[Graphical view]
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiPF01781. Ribosomal_L38e. 1 hit.
[Graphical view]
ProDomiPD010361. Ribosomal_L38e. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P63174-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRKIEEIKD FLLTARRKDA KSVKIKKNKD NVKFKVRCSR YLYTLVITDK
60 70
EKAEKLKQSL PPGLAVKELK
Length:70
Mass (Da):8,218
Last modified:January 23, 2007 - v2
Checksum:iFDD9A107BC98DBBA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X57007 mRNA. Translation: CAA40328.1.
BC101933 mRNA. Translation: AAI01934.1.
PIRiS15658. R5RT38.
RefSeqiNP_001071060.1. NM_001077592.1.
XP_001063134.1. XM_001063134.5.
XP_001065954.1. XM_001065954.6.
XP_001074532.1. XM_001074532.5.
XP_002726074.1. XM_002726028.5.
XP_008766615.1. XM_008768393.1.
UniGeneiRn.129626.

Genome annotation databases

EnsembliENSRNOT00000023369; ENSRNOP00000023368; ENSRNOG00000049047.
ENSRNOT00000042661; ENSRNOP00000042022; ENSRNOG00000030747.
ENSRNOT00000044141; ENSRNOP00000042288; ENSRNOG00000048701.
ENSRNOT00000046518; ENSRNOP00000050202; ENSRNOG00000029377.
ENSRNOT00000050489; ENSRNOP00000050353; ENSRNOG00000033686.
GeneIDi682793.
685963.
689284.
690468.
KEGGirno:682793.
rno:685963.
rno:689284.
rno:690468.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X57007 mRNA. Translation: CAA40328.1.
BC101933 mRNA. Translation: AAI01934.1.
PIRiS15658. R5RT38.
RefSeqiNP_001071060.1. NM_001077592.1.
XP_001063134.1. XM_001063134.5.
XP_001065954.1. XM_001065954.6.
XP_001074532.1. XM_001074532.5.
XP_002726074.1. XM_002726028.5.
XP_008766615.1. XM_008768393.1.
UniGeneiRn.129626.

3D structure databases

ProteinModelPortaliP63174.
SMRiP63174.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4579733.
STRINGi10116.ENSRNOP00000050353.

PTM databases

iPTMnetiP63174.
PhosphoSitePlusiP63174.

Proteomic databases

PaxDbiP63174.
PRIDEiP63174.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000023369; ENSRNOP00000023368; ENSRNOG00000049047.
ENSRNOT00000042661; ENSRNOP00000042022; ENSRNOG00000030747.
ENSRNOT00000044141; ENSRNOP00000042288; ENSRNOG00000048701.
ENSRNOT00000046518; ENSRNOP00000050202; ENSRNOG00000029377.
ENSRNOT00000050489; ENSRNOP00000050353; ENSRNOG00000033686.
GeneIDi682793.
685963.
689284.
690468.
KEGGirno:682793.
rno:685963.
rno:689284.
rno:690468.

Organism-specific databases

CTDi6169.
RGDi1305573. Rpl38.

Phylogenomic databases

eggNOGiKOG3499. Eukaryota.
ENOG4112229. LUCA.
GeneTreeiENSGT00390000003718.
HOGENOMiHOG000188979.
HOVERGENiHBG001013.
InParanoidiP63174.
KOiK02923.
OMAiLYTLVIQ.
OrthoDBiEOG091G0SPL.
PhylomeDBiP63174.
TreeFamiTF300215.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP63174.

Gene expression databases

BgeeiENSRNOG00000029377.
ExpressionAtlasiP63174. differential.
GenevisibleiP63174. RN.

Family and domain databases

InterProiIPR002675. Ribosomal_L38e.
[Graphical view]
PANTHERiPTHR10965. PTHR10965. 1 hit.
PfamiPF01781. Ribosomal_L38e. 1 hit.
[Graphical view]
ProDomiPD010361. Ribosomal_L38e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiRL38_RAT
AccessioniPrimary (citable) accession number: P63174
Secondary accession number(s): P23411, Q3T1G5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 27, 2004
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 94 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.