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P62907

- RL10A_RAT

UniProt

P62907 - RL10A_RAT

Protein

60S ribosomal protein L10a

Gene

Rpl10a

Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 81 (01 Oct 2014)
      Sequence version 2 (23 Jan 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L10a
    Gene namesi
    Name:Rpl10a
    OrganismiRattus norvegicus (Rat)
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 20

    Organism-specific databases

    RGDi620497. Rpl10a.

    Subcellular locationi

    GO - Cellular componenti

    1. cytosolic large ribosomal subunit Source: ProtInc

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 21721660S ribosomal protein L10aPRO_0000125822Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei11 – 111PhosphotyrosineBy similarity
    Modified residuei91 – 911N6-acetyllysineBy similarity
    Modified residuei106 – 1061N6-acetyllysineBy similarity
    Modified residuei118 – 1181N6-acetyllysineBy similarity

    Keywords - PTMi

    Acetylation, Phosphoprotein

    Proteomic databases

    PaxDbiP62907.
    PRIDEiP62907.

    PTM databases

    PhosphoSiteiP62907.

    Expressioni

    Gene expression databases

    GenevestigatoriP62907.

    Interactioni

    Protein-protein interaction databases

    IntActiP62907. 1 interaction.
    MINTiMINT-4576640.
    STRINGi10116.ENSRNOP00000000603.

    Structurei

    3D structure databases

    ProteinModelPortaliP62907.
    SMRiP62907. Positions 1-217.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L1P family.Curated

    Phylogenomic databases

    eggNOGiCOG0081.
    GeneTreeiENSGT00390000008767.
    HOGENOMiHOG000207014.
    HOVERGENiHBG055239.
    InParanoidiP62907.
    KOiK02865.
    OMAiIDRAKHG.
    OrthoDBiEOG7S7SG8.
    PhylomeDBiP62907.
    TreeFamiTF300791.

    Family and domain databases

    Gene3Di3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    InterProiIPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view]
    PfamiPF00687. Ribosomal_L1. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMiSSF56808. SSF56808. 1 hit.
    PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P62907-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSSKVSRDTL YEAVREVLHG NQRKRRKFLE TVELQISLKN YDPQKDKRFS    50
    GTVRLKSTPR PKFSVCVLGD QQHCDEAKAV DIPHMDIEAL KKLNKNKKLV 100
    KKLAKKYDAF LASESLIKQI PRILGPGLNK AGKFPSLLTH NENMVAKVDE 150
    VKSTIKFQMK KVLCLAVAVG HVKMTDDELV YNIHLAVNFL VSLLKKNWQN 200
    VRALYIKSTM GKPQRLY 217
    Length:217
    Mass (Da):24,831
    Last modified:January 23, 2007 - v2
    Checksum:i38F1A31119A751D3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X93352 mRNA. Translation: CAA63732.1.
    BC058468 mRNA. Translation: AAH58468.1.
    PIRiJC4677.
    RefSeqiNP_112327.1. NM_031065.1.
    UniGeneiRn.161731.
    Rn.2262.

    Genome annotation databases

    EnsembliENSRNOT00000000603; ENSRNOP00000000603; ENSRNOG00000000505.
    GeneIDi81729.
    KEGGirno:81729.
    UCSCiRGD:620497. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X93352 mRNA. Translation: CAA63732.1 .
    BC058468 mRNA. Translation: AAH58468.1 .
    PIRi JC4677.
    RefSeqi NP_112327.1. NM_031065.1.
    UniGenei Rn.161731.
    Rn.2262.

    3D structure databases

    ProteinModelPortali P62907.
    SMRi P62907. Positions 1-217.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P62907. 1 interaction.
    MINTi MINT-4576640.
    STRINGi 10116.ENSRNOP00000000603.

    PTM databases

    PhosphoSitei P62907.

    Proteomic databases

    PaxDbi P62907.
    PRIDEi P62907.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000000603 ; ENSRNOP00000000603 ; ENSRNOG00000000505 .
    GeneIDi 81729.
    KEGGi rno:81729.
    UCSCi RGD:620497. rat.

    Organism-specific databases

    CTDi 4736.
    RGDi 620497. Rpl10a.

    Phylogenomic databases

    eggNOGi COG0081.
    GeneTreei ENSGT00390000008767.
    HOGENOMi HOG000207014.
    HOVERGENi HBG055239.
    InParanoidi P62907.
    KOi K02865.
    OMAi IDRAKHG.
    OrthoDBi EOG7S7SG8.
    PhylomeDBi P62907.
    TreeFami TF300791.

    Miscellaneous databases

    NextBioi 18266.
    PROi P62907.

    Gene expression databases

    Genevestigatori P62907.

    Family and domain databases

    Gene3Di 3.30.190.20. 2 hits.
    3.40.50.790. 1 hit.
    InterProi IPR002143. Ribosomal_L1.
    IPR023674. Ribosomal_L1-like.
    IPR028364. Ribosomal_L1/biogenesis.
    IPR016094. Ribosomal_L1_2-a/b-sand.
    IPR016095. Ribosomal_L1_3-a/b-sand.
    IPR023673. Ribosomal_L1_CS.
    [Graphical view ]
    Pfami PF00687. Ribosomal_L1. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002155. Ribosomal_L1. 1 hit.
    SUPFAMi SSF56808. SSF56808. 1 hit.
    PROSITEi PS01199. RIBOSOMAL_L1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The primary structure of rat ribosomal protein L10a."
      Olvera J., Wool I.G.
      Biochem. Biophys. Res. Commun. 220:954-957(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 199-213.
      Strain: Sprague-Dawley.
      Tissue: Liver.
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Pituitary.

    Entry informationi

    Entry nameiRL10A_RAT
    AccessioniPrimary (citable) accession number: P62907
    Secondary accession number(s): P52859, P53025
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 31, 2004
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 81 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3