Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

60S ribosomal protein L39

Gene

Rpl39

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

This protein is the smallest and one of the most basic of the proteins in liver ribosomes.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L39
Gene namesi
Name:Rpl39
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 14, Chromosome 15, Chromosome 18, Chromosome 20, Chromosome 7, Chromosome X

Organism-specific databases

RGDi3593 Rpl39

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001270262 – 5160S ribosomal protein L39Add BLAST50

Proteomic databases

PaxDbiP62893
PRIDEiP62893

Expressioni

Gene expression databases

BgeeiENSRNOG00000029267
ExpressionAtlasiP62893 baseline and differential

Interactioni

Subunit structurei

Interacts with IMPACT.By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000059662

Structurei

3D structure databases

ProteinModelPortaliP62893
SMRiP62893
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0002 Eukaryota
COG2167 LUCA
GeneTreeiENSGT00390000014814
HOVERGENiHBG001245
InParanoidiP62893
KOiK02924
OMAiARQNRPI
OrthoDBiEOG091G18Y7
PhylomeDBiP62893
TreeFamiTF300223

Family and domain databases

Gene3Di1.10.1620.10, 1 hit
HAMAPiMF_00629 Ribosomal_L39e, 1 hit
InterProiView protein in InterPro
IPR000077 Ribosomal_L39
IPR020083 Ribosomal_L39_CS
IPR023626 Ribosomal_L39e_dom_sf
PANTHERiPTHR19970 PTHR19970, 1 hit
PfamiView protein in Pfam
PF00832 Ribosomal_L39, 1 hit
SUPFAMiSSF48662 SSF48662, 1 hit
PROSITEiView protein in PROSITE
PS00051 RIBOSOMAL_L39E, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62893-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSHKTFRIK RFLAKKQKQN RPIPQWIRMK TGNKIRYNSK RRHWRRTKLG

L
Length:51
Mass (Da):6,407
Last modified:January 23, 2007 - v2
Checksum:i2023CA8590C7752C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X82551 mRNA Translation: CAA57900.1
BC058489 mRNA Translation: AAH58489.1
PIRiJC4229 R6RT39
RefSeqiNP_037007.1, NM_012875.2
XP_008756620.1, XM_008758398.2
XP_008763422.1, XM_008765200.2
XP_008766241.1, XM_008768019.2
XP_008768328.1, XM_008770106.2
XP_008768835.1, XM_008770613.2
XP_008770213.1, XM_008771991.2
XP_008771160.1, XM_008772938.2
XP_008771430.1, XM_008773208.2
XP_008772314.1, XM_008774092.1
XP_008773161.1, XM_008774939.2
UniGeneiRn.129577
Rn.162379
Rn.6172

Genome annotation databases

EnsembliENSRNOT00000040815; ENSRNOP00000045098; ENSRNOG00000032835
ENSRNOT00000043244; ENSRNOP00000049713; ENSRNOG00000034237
ENSRNOT00000046536; ENSRNOP00000049665; ENSRNOG00000048073
ENSRNOT00000050345; ENSRNOP00000044553; ENSRNOG00000029267
ENSRNOT00000051137; ENSRNOP00000041329; ENSRNOG00000050393
ENSRNOT00000059010; ENSRNOP00000055790; ENSRNOG00000038654
ENSRNOT00000092456; ENSRNOP00000075910; ENSRNOG00000043348
GeneIDi103690821
103692785
103693375
103694169
103694404
25347
KEGGirno:103690821
rno:103692785
rno:103693375
rno:103694169
rno:103694404
rno:25347
UCSCiRGD:3593 rat

Similar proteinsi

Entry informationi

Entry nameiRL39_RAT
AccessioniPrimary (citable) accession number: P62893
Secondary accession number(s): P02404, P39025, Q9BYF2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 105 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Cookie policy

We would like to use anonymized google analytics cookies to gather statistics on how uniprot.org is used in aggregate. Learn more

UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health