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Protein

60S ribosomal protein L39

Gene

Rpl39

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L39
Gene namesi
Name:Rpl39
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componentsi: Chromosome 14, Chromosome 15, Chromosome 18, Chromosome 20, Chromosome 7, Chromosome X

Organism-specific databases

RGDi3593. Rpl39.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: RGD
  • extracellular space Source: Ensembl
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001270262 – 5160S ribosomal protein L39Add BLAST50

Proteomic databases

PaxDbiP62893.
PRIDEiP62893.

Expressioni

Gene expression databases

BgeeiENSRNOG00000029267.
ExpressionAtlasiP62893. baseline and differential.

Interactioni

Subunit structurei

Interacts with IMPACT.By similarity

Protein-protein interaction databases

MINTiMINT-4568130.
STRINGi10116.ENSRNOP00000059662.

Structurei

3D structure databases

ProteinModelPortaliP62893.
SMRiP62893.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L39e family.Curated

Phylogenomic databases

eggNOGiKOG0002. Eukaryota.
COG2167. LUCA.
GeneTreeiENSGT00390000014814.
HOVERGENiHBG001245.
InParanoidiP62893.
KOiK02924.
OMAiARQNRPI.
OrthoDBiEOG091G18Y7.
PhylomeDBiP62893.
TreeFamiTF300223.

Family and domain databases

Gene3Di1.10.1620.10. 1 hit.
HAMAPiMF_00629. Ribosomal_L39e. 1 hit.
InterProiIPR000077. Ribosomal_L39.
IPR020083. Ribosomal_L39_CS.
IPR023626. Ribosomal_L39e_dom.
[Graphical view]
PANTHERiPTHR19970. PTHR19970. 1 hit.
PfamiPF00832. Ribosomal_L39. 1 hit.
[Graphical view]
SUPFAMiSSF48662. SSF48662. 1 hit.
PROSITEiPS00051. RIBOSOMAL_L39E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P62893-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSHKTFRIK RFLAKKQKQN RPIPQWIRMK TGNKIRYNSK RRHWRRTKLG

L
Length:51
Mass (Da):6,407
Last modified:January 23, 2007 - v2
Checksum:i2023CA8590C7752C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X82551 mRNA. Translation: CAA57900.1.
BC058489 mRNA. Translation: AAH58489.1.
PIRiJC4229. R6RT39.
RefSeqiNP_037007.1. NM_012875.2.
XP_008756620.1. XM_008758398.2.
XP_008763422.1. XM_008765200.2.
XP_008766241.1. XM_008768019.2.
XP_008768328.1. XM_008770106.2.
XP_008768835.1. XM_008770613.2.
XP_008770213.1. XM_008771991.2.
XP_008771160.1. XM_008772938.2.
XP_008771430.1. XM_008773208.2.
XP_008772314.1. XM_008774092.1.
XP_008773161.1. XM_008774939.2.
UniGeneiRn.129577.
Rn.162379.
Rn.6172.

Genome annotation databases

EnsembliENSRNOT00000040815; ENSRNOP00000045098; ENSRNOG00000032835.
ENSRNOT00000043244; ENSRNOP00000049713; ENSRNOG00000034237.
ENSRNOT00000046536; ENSRNOP00000049665; ENSRNOG00000048073.
ENSRNOT00000050345; ENSRNOP00000044553; ENSRNOG00000029267.
ENSRNOT00000051137; ENSRNOP00000041329; ENSRNOG00000050393.
ENSRNOT00000059010; ENSRNOP00000055790; ENSRNOG00000038654.
ENSRNOT00000092456; ENSRNOP00000075910; ENSRNOG00000043348.
GeneIDi103690821.
103692785.
103693375.
103694169.
103694404.
25347.
KEGGirno:103690821.
rno:103692785.
rno:103692831.
rno:103693375.
rno:103694169.
rno:103694404.
rno:25347.
UCSCiRGD:3593. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X82551 mRNA. Translation: CAA57900.1.
BC058489 mRNA. Translation: AAH58489.1.
PIRiJC4229. R6RT39.
RefSeqiNP_037007.1. NM_012875.2.
XP_008756620.1. XM_008758398.2.
XP_008763422.1. XM_008765200.2.
XP_008766241.1. XM_008768019.2.
XP_008768328.1. XM_008770106.2.
XP_008768835.1. XM_008770613.2.
XP_008770213.1. XM_008771991.2.
XP_008771160.1. XM_008772938.2.
XP_008771430.1. XM_008773208.2.
XP_008772314.1. XM_008774092.1.
XP_008773161.1. XM_008774939.2.
UniGeneiRn.129577.
Rn.162379.
Rn.6172.

3D structure databases

ProteinModelPortaliP62893.
SMRiP62893.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

MINTiMINT-4568130.
STRINGi10116.ENSRNOP00000059662.

Proteomic databases

PaxDbiP62893.
PRIDEiP62893.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000040815; ENSRNOP00000045098; ENSRNOG00000032835.
ENSRNOT00000043244; ENSRNOP00000049713; ENSRNOG00000034237.
ENSRNOT00000046536; ENSRNOP00000049665; ENSRNOG00000048073.
ENSRNOT00000050345; ENSRNOP00000044553; ENSRNOG00000029267.
ENSRNOT00000051137; ENSRNOP00000041329; ENSRNOG00000050393.
ENSRNOT00000059010; ENSRNOP00000055790; ENSRNOG00000038654.
ENSRNOT00000092456; ENSRNOP00000075910; ENSRNOG00000043348.
GeneIDi103690821.
103692785.
103693375.
103694169.
103694404.
25347.
KEGGirno:103690821.
rno:103692785.
rno:103692831.
rno:103693375.
rno:103694169.
rno:103694404.
rno:25347.
UCSCiRGD:3593. rat.

Organism-specific databases

CTDi6170.
RGDi3593. Rpl39.

Phylogenomic databases

eggNOGiKOG0002. Eukaryota.
COG2167. LUCA.
GeneTreeiENSGT00390000014814.
HOVERGENiHBG001245.
InParanoidiP62893.
KOiK02924.
OMAiARQNRPI.
OrthoDBiEOG091G18Y7.
PhylomeDBiP62893.
TreeFamiTF300223.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP62893.

Gene expression databases

BgeeiENSRNOG00000029267.
ExpressionAtlasiP62893. baseline and differential.

Family and domain databases

Gene3Di1.10.1620.10. 1 hit.
HAMAPiMF_00629. Ribosomal_L39e. 1 hit.
InterProiIPR000077. Ribosomal_L39.
IPR020083. Ribosomal_L39_CS.
IPR023626. Ribosomal_L39e_dom.
[Graphical view]
PANTHERiPTHR19970. PTHR19970. 1 hit.
PfamiPF00832. Ribosomal_L39. 1 hit.
[Graphical view]
SUPFAMiSSF48662. SSF48662. 1 hit.
PROSITEiPS00051. RIBOSOMAL_L39E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL39_RAT
AccessioniPrimary (citable) accession number: P62893
Secondary accession number(s): P02404, P39025, Q9BYF2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 95 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Miscellaneous

This protein is the smallest and one of the most basic of the proteins in liver ribosomes.

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.