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Protein

60S ribosomal protein L39

Gene

Rpl39

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Miscellaneous

This protein is the smallest and one of the most basic of the proteins in liver ribosomes.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L39
Gene namesi
Name:Rpl39
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome X

Organism-specific databases

MGIiMGI:1914498 Rpl39

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001270251 – 5160S ribosomal protein L39Add BLAST51

Proteomic databases

EPDiP62892
PaxDbiP62892
PeptideAtlasiP62892
PRIDEiP62892
TopDownProteomicsiP62892

PTM databases

iPTMnetiP62892
PhosphoSitePlusiP62892

Expressioni

Gene expression databases

BgeeiENSMUSG00000079641
CleanExiMM_RPL39
ExpressionAtlasiP62892 baseline and differential
GenevisibleiP62892 MM

Interactioni

Subunit structurei

Interacts with IMPACT (PubMed:22404850).1 Publication

Protein-protein interaction databases

BioGridi212046, 1 interactor
STRINGi10090.ENSMUSP00000110886

Structurei

3D structure databases

ProteinModelPortaliP62892
SMRiP62892
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0002 Eukaryota
COG2167 LUCA
GeneTreeiENSGT00390000014814
HOVERGENiHBG001245
InParanoidiP62892
KOiK02924
OMAiARQNRPI
OrthoDBiEOG091G18Y7
PhylomeDBiP62892
TreeFamiTF300223

Family and domain databases

Gene3Di1.10.1620.10, 1 hit
HAMAPiMF_00629 Ribosomal_L39e, 1 hit
InterProiView protein in InterPro
IPR000077 Ribosomal_L39
IPR020083 Ribosomal_L39_CS
IPR023626 Ribosomal_L39e_dom_sf
PANTHERiPTHR19970 PTHR19970, 1 hit
PfamiView protein in Pfam
PF00832 Ribosomal_L39, 1 hit
SUPFAMiSSF48662 SSF48662, 1 hit
PROSITEiView protein in PROSITE
PS00051 RIBOSOMAL_L39E, 1 hit

Sequencei

Sequence statusi: Complete.

P62892-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSHKTFRIK RFLAKKQKQN RPIPQWIRMK TGNKIRYNSK RRHWRRTKLG

L
Length:51
Mass (Da):6,407
Last modified:January 23, 2007 - v2
Checksum:i2023CA8590C7752C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK002591 mRNA Translation: BAB22212.1
AK005511 mRNA Translation: BAB24090.1
AK007821 mRNA Translation: BAB25284.1
AK008853 mRNA Translation: BAB25930.1
AK013381 mRNA Translation: BAB28820.1
AK028139 mRNA Translation: BAC25767.1
AK088761 mRNA Translation: BAC40552.1
BC039092 mRNA Translation: AAH39092.1
CCDSiCCDS40927.1
RefSeqiNP_080331.1, NM_026055.2
UniGeneiMm.30478

Genome annotation databases

EnsembliENSMUST00000115231; ENSMUSP00000110886; ENSMUSG00000079641
GeneIDi67248
KEGGimmu:67248
UCSCiuc009syc.1 mouse

Similar proteinsi

Entry informationi

Entry nameiRL39_MOUSE
AccessioniPrimary (citable) accession number: P62892
Secondary accession number(s): P02404, P39025, Q9BYF2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 114 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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