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Protein

60S ribosomal protein L39

Gene

Rpl39

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Miscellaneous

This protein is the smallest and one of the most basic of the proteins in liver ribosomes.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L39
Gene namesi
Name:Rpl39
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome X

Organism-specific databases

MGIiMGI:1914498. Rpl39.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001270251 – 5160S ribosomal protein L39Add BLAST51

Proteomic databases

EPDiP62892.
PaxDbiP62892.
PeptideAtlasiP62892.
PRIDEiP62892.
TopDownProteomicsiP62892.

PTM databases

iPTMnetiP62892.
PhosphoSitePlusiP62892.

Expressioni

Gene expression databases

BgeeiENSMUSG00000079641.
CleanExiMM_RPL39.
ExpressionAtlasiP62892. baseline and differential.
GenevisibleiP62892. MM.

Interactioni

Subunit structurei

Interacts with IMPACT (PubMed:22404850).1 Publication

Protein-protein interaction databases

BioGridi212046. 1 interactor.
STRINGi10090.ENSMUSP00000110886.

Structurei

3D structure databases

ProteinModelPortaliP62892.
SMRiP62892.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0002. Eukaryota.
COG2167. LUCA.
GeneTreeiENSGT00390000014814.
HOVERGENiHBG001245.
InParanoidiP62892.
KOiK02924.
OMAiARQNRPI.
OrthoDBiEOG091G18Y7.
PhylomeDBiP62892.
TreeFamiTF300223.

Family and domain databases

Gene3Di1.10.1620.10. 1 hit.
HAMAPiMF_00629. Ribosomal_L39e. 1 hit.
InterProiView protein in InterPro
IPR000077. Ribosomal_L39.
IPR020083. Ribosomal_L39_CS.
IPR023626. Ribosomal_L39e_dom_sf.
PANTHERiPTHR19970. PTHR19970. 1 hit.
PfamiView protein in Pfam
PF00832. Ribosomal_L39. 1 hit.
SUPFAMiSSF48662. SSF48662. 1 hit.
PROSITEiView protein in PROSITE
PS00051. RIBOSOMAL_L39E. 1 hit.

Sequencei

Sequence statusi: Complete.

P62892-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSHKTFRIK RFLAKKQKQN RPIPQWIRMK TGNKIRYNSK RRHWRRTKLG

L
Length:51
Mass (Da):6,407
Last modified:January 23, 2007 - v2
Checksum:i2023CA8590C7752C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK002591 mRNA. Translation: BAB22212.1.
AK005511 mRNA. Translation: BAB24090.1.
AK007821 mRNA. Translation: BAB25284.1.
AK008853 mRNA. Translation: BAB25930.1.
AK013381 mRNA. Translation: BAB28820.1.
AK028139 mRNA. Translation: BAC25767.1.
AK088761 mRNA. Translation: BAC40552.1.
BC039092 mRNA. Translation: AAH39092.1.
CCDSiCCDS40927.1.
RefSeqiNP_080331.1. NM_026055.2.
UniGeneiMm.30478.

Genome annotation databases

EnsembliENSMUST00000115231; ENSMUSP00000110886; ENSMUSG00000079641.
GeneIDi67248.
KEGGimmu:67248.
UCSCiuc009syc.1. mouse.

Similar proteinsi

Entry informationi

Entry nameiRL39_MOUSE
AccessioniPrimary (citable) accession number: P62892
Secondary accession number(s): P02404, P39025, Q9BYF2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 21, 1986
Last sequence update: January 23, 2007
Last modified: November 22, 2017
This is version 112 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families