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Protein

40S ribosomal protein S28

Gene

Rps28

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • maturation of SSU-rRNA Source: GO_Central
  • ribosomal small subunit assembly Source: GO_Central
  • ribosome biogenesis Source: UniProtKB
  • translation Source: ProtInc

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S28
Gene namesi
Name:Rps28
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi621046. Rps28.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001368251 – 6940S ribosomal protein S28Add BLAST69

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionine1 Publication1
Modified residuei41PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiP62859.
PRIDEiP62859.

PTM databases

iPTMnetiP62859.
PhosphoSitePlusiP62859.

Expressioni

Gene expression databases

BgeeiENSRNOG00000042886.
GenevisibleiP62859. RN.

Interactioni

Protein-protein interaction databases

IntActiP62859. 1 interactor.
MINTiMINT-1855234.
STRINGi10116.ENSRNOP00000060568.

Structurei

3D structure databases

ProteinModelPortaliP62859.
SMRiP62859.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3502. Eukaryota.
COG2053. LUCA.
GeneTreeiENSGT00390000003580.
HOVERGENiHBG000219.
InParanoidiP62859.
KOiK02979.
OMAiMHGEASQ.
OrthoDBiEOG091G19WT.
PhylomeDBiP62859.
TreeFamiTF300136.

Family and domain databases

CDDicd04457. S1_S28E. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e. 1 hit.
InterProiView protein in InterPro
IPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiView protein in Pfam
PF01200. Ribosomal_S28e. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD005541. Ribosomal_S28e. 1 hit.
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiView protein in PROSITE
PS00961. RIBOSOMAL_S28E. 1 hit.

Sequencei

Sequence statusi: Complete.

P62859-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDTSRVQPIK LARVTKVLGR TGSQGQCTQV RVEFMDDTSR SIIRNVKGPV
60
REGDVLTLLE SEREARRLR
Length:69
Mass (Da):7,841
Last modified:August 16, 2004 - v1
Checksum:i49902FE9376EB74F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59277 mRNA. Translation: CAA41967.1.
PIRiJQ1170. R3RT28.
RefSeqiNP_001099200.1. NM_001105730.1.
UniGeneiRn.233867.
Rn.6005.

Genome annotation databases

EnsembliENSRNOT00000068323; ENSRNOP00000060568; ENSRNOG00000042886.
GeneIDi691531.
KEGGirno:691531.
UCSCiRGD:621046. rat.

Similar proteinsi

Entry informationi

Entry nameiRS28_RAT
AccessioniPrimary (citable) accession number: P62859
Secondary accession number(s): P25112
Entry historyiIntegrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: August 16, 2004
Last modified: September 27, 2017
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families