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Protein

40S ribosomal protein S28

Gene

Rps28

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: ProtInc
  • structural constituent of ribosome Source: GO_Central

GO - Biological processi

  • ribosome biogenesis Source: UniProtKB
  • rRNA export from nucleus Source: GO_Central
  • translation Source: ProtInc
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S28
Gene namesi
Name:Rps28
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi621046. Rps28.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 696940S ribosomal protein S28PRO_0000136825Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineCurated
Modified residuei41 – 411PhosphoserineBy similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiP62859.
PRIDEiP62859.

PTM databases

iPTMnetiP62859.
PhosphoSiteiP62859.

Expressioni

Gene expression databases

BgeeiENSRNOG00000042886.
GenevisibleiP62859. RN.

Interactioni

Protein-protein interaction databases

IntActiP62859. 1 interaction.
MINTiMINT-1855234.
STRINGi10116.ENSRNOP00000060568.

Structurei

3D structure databases

ProteinModelPortaliP62859.
SMRiP62859. Positions 8-68.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S28e family.Curated

Phylogenomic databases

eggNOGiKOG3502. Eukaryota.
COG2053. LUCA.
GeneTreeiENSGT00390000003580.
HOVERGENiHBG000219.
InParanoidiP62859.
KOiK02979.
OMAiTEVLCRT.
OrthoDBiEOG091G19WT.
PhylomeDBiP62859.
TreeFamiTF300136.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view]
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiPF01200. Ribosomal_S28e. 1 hit.
[Graphical view]
ProDomiPD005541. Ribosomal_S28e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62859-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDTSRVQPIK LARVTKVLGR TGSQGQCTQV RVEFMDDTSR SIIRNVKGPV
60
REGDVLTLLE SEREARRLR
Length:69
Mass (Da):7,841
Last modified:August 16, 2004 - v1
Checksum:i49902FE9376EB74F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59277 mRNA. Translation: CAA41967.1.
PIRiJQ1170. R3RT28.
RefSeqiNP_001099200.1. NM_001105730.1.
UniGeneiRn.6005.

Genome annotation databases

EnsembliENSRNOT00000068323; ENSRNOP00000060568; ENSRNOG00000042886.
GeneIDi691531.
KEGGirno:691531.
UCSCiRGD:621046. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X59277 mRNA. Translation: CAA41967.1.
PIRiJQ1170. R3RT28.
RefSeqiNP_001099200.1. NM_001105730.1.
UniGeneiRn.6005.

3D structure databases

ProteinModelPortaliP62859.
SMRiP62859. Positions 8-68.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP62859. 1 interaction.
MINTiMINT-1855234.
STRINGi10116.ENSRNOP00000060568.

PTM databases

iPTMnetiP62859.
PhosphoSiteiP62859.

Proteomic databases

PaxDbiP62859.
PRIDEiP62859.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000068323; ENSRNOP00000060568; ENSRNOG00000042886.
GeneIDi691531.
KEGGirno:691531.
UCSCiRGD:621046. rat.

Organism-specific databases

CTDi6234.
RGDi621046. Rps28.

Phylogenomic databases

eggNOGiKOG3502. Eukaryota.
COG2053. LUCA.
GeneTreeiENSGT00390000003580.
HOVERGENiHBG000219.
InParanoidiP62859.
KOiK02979.
OMAiTEVLCRT.
OrthoDBiEOG091G19WT.
PhylomeDBiP62859.
TreeFamiTF300136.

Enzyme and pathway databases

ReactomeiR-RNO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-RNO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-RNO-6791226. Major pathway of rRNA processing in the nucleolus.
R-RNO-72649. Translation initiation complex formation.
R-RNO-72689. Formation of a pool of free 40S subunits.
R-RNO-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-RNO-72702. Ribosomal scanning and start codon recognition.
R-RNO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-RNO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-RNO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP62859.

Gene expression databases

BgeeiENSRNOG00000042886.
GenevisibleiP62859. RN.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_00292. Ribosomal_S28e. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR000289. Ribosomal_S28e.
IPR028626. Ribosomal_S28e_CS.
[Graphical view]
PANTHERiPTHR10769. PTHR10769. 1 hit.
PfamiPF01200. Ribosomal_S28e. 1 hit.
[Graphical view]
ProDomiPD005541. Ribosomal_S28e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00961. RIBOSOMAL_S28E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS28_RAT
AccessioniPrimary (citable) accession number: P62859
Secondary accession number(s): P25112
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: August 16, 2004
Last modified: September 7, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.