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Protein

40S ribosomal protein S25

Gene

Rps25

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: RGD

GO - Biological processi

  • cellular response to amino acid starvation Source: RGD
  • ribosomal small subunit assembly Source: RGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S25
Gene namesi
Name:Rps25
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi621043. Rps25.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: RGD
  • nucleus Source: RGD
  • polysome Source: RGD
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12512540S ribosomal protein S25PRO_0000192871Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei43 – 431N6-acetyllysineBy similarity
Modified residuei52 – 521N6-acetyllysine; alternateBy similarity
Modified residuei52 – 521N6-succinyllysine; alternateBy similarity
Modified residuei60 – 601N6-acetyllysineBy similarity
Modified residuei66 – 661N6-acetyllysineBy similarity
Modified residuei94 – 941N6-acetyllysine; alternateBy similarity
Modified residuei94 – 941N6-succinyllysine; alternateBy similarity

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP62853.
PRIDEiP62853.

PTM databases

iPTMnetiP62853.
PhosphoSiteiP62853.

Expressioni

Gene expression databases

BgeeiENSRNOG00000027503.
GenevisibleiP62853. RN.

Interactioni

Protein-protein interaction databases

BioGridi250779. 1 interaction.
IntActiP62853. 2 interactions.
MINTiMINT-1857376.
STRINGi10116.ENSRNOP00000033144.

Structurei

3D structure databases

ProteinModelPortaliP62853.
SMRiP62853. Positions 41-115.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S25e family.Curated

Phylogenomic databases

eggNOGiKOG1767. Eukaryota.
COG4901. LUCA.
HOGENOMiHOG000203673.
HOVERGENiHBG054579.
InParanoidiP62853.
KOiK02975.
OrthoDBiEOG091G134K.
PhylomeDBiP62853.
TreeFamiTF314909.

Family and domain databases

InterProiIPR004977. Ribosomal_S25.
[Graphical view]
PANTHERiPTHR12850. PTHR12850. 1 hit.
PfamiPF03297. Ribosomal_S25. 1 hit.
[Graphical view]
ProDomiPD012268. Ribosomal_S25. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P62853-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPPKDDKKKK DAGKSAKKDK DPVNKSGGKA KKKKWSKGKV RDKLNNLVLF
60 70 80 90 100
DKATYDKLCK EVPNYKLITP AVVSERLKIR GSLARAALQE LLSKGLIKLV
110 120
SKHRAQVIYT RNTKGGDAPA AGEDA
Length:125
Mass (Da):13,742
Last modified:August 16, 2004 - v1
Checksum:iB8E05F04FCF2F1A9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X62482 Genomic DNA. Translation: CAA44349.1.
BC103658 mRNA. Translation: AAI03659.1.
PIRiA38969. R3RT25.
RefSeqiNP_001005528.1. NM_001005528.1.
UniGeneiRn.60855.

Genome annotation databases

GeneIDi122799.
KEGGirno:122799.
UCSCiRGD:621043. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X62482 Genomic DNA. Translation: CAA44349.1.
BC103658 mRNA. Translation: AAI03659.1.
PIRiA38969. R3RT25.
RefSeqiNP_001005528.1. NM_001005528.1.
UniGeneiRn.60855.

3D structure databases

ProteinModelPortaliP62853.
SMRiP62853. Positions 41-115.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi250779. 1 interaction.
IntActiP62853. 2 interactions.
MINTiMINT-1857376.
STRINGi10116.ENSRNOP00000033144.

PTM databases

iPTMnetiP62853.
PhosphoSiteiP62853.

Proteomic databases

PaxDbiP62853.
PRIDEiP62853.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi122799.
KEGGirno:122799.
UCSCiRGD:621043. rat.

Organism-specific databases

CTDi6230.
RGDi621043. Rps25.

Phylogenomic databases

eggNOGiKOG1767. Eukaryota.
COG4901. LUCA.
HOGENOMiHOG000203673.
HOVERGENiHBG054579.
InParanoidiP62853.
KOiK02975.
OrthoDBiEOG091G134K.
PhylomeDBiP62853.
TreeFamiTF314909.

Miscellaneous databases

PROiP62853.

Gene expression databases

BgeeiENSRNOG00000027503.
GenevisibleiP62853. RN.

Family and domain databases

InterProiIPR004977. Ribosomal_S25.
[Graphical view]
PANTHERiPTHR12850. PTHR12850. 1 hit.
PfamiPF03297. Ribosomal_S25. 1 hit.
[Graphical view]
ProDomiPD012268. Ribosomal_S25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiRS25_RAT
AccessioniPrimary (citable) accession number: P62853
Secondary accession number(s): P25111, Q3SYP7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: August 16, 2004
Last modified: September 7, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.