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P62814

- VATB2_MOUSE

UniProt

P62814 - VATB2_MOUSE

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Protein

V-type proton ATPase subunit B, brain isoform

Gene
Atp6v1b2, Atp6b2, Vat2
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances Source: InterPro

GO - Biological processi

  1. ATP hydrolysis coupled proton transport Source: InterPro
  2. ATP metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Hydrogen ion transport, Ion transport, Transport

Enzyme and pathway databases

ReactomeiREACT_198345. Phagosomal maturation (early endosomal stage).
REACT_198515. Transferrin endocytosis and recycling.

Protein family/group databases

TCDBi3.A.2.2.6. the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
V-type proton ATPase subunit B, brain isoform
Short name:
V-ATPase subunit B 2
Alternative name(s):
Endomembrane proton pump 58 kDa subunit
Vacuolar proton pump subunit B 2
Gene namesi
Name:Atp6v1b2
Synonyms:Atp6b2, Vat2
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 8

Organism-specific databases

MGIiMGI:109618. Atp6v1b2.

Subcellular locationi

Endomembrane system; Peripheral membrane protein. Melanosome By similarity
Note: Endomembrane.UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB
  2. cytosol Source: UniProtKB
  3. Golgi apparatus Source: Ensembl
  4. integral component of membrane Source: Ensembl
  5. lysosomal membrane Source: Ensembl
  6. melanosome Source: UniProtKB-SubCell
  7. microvillus Source: UniProtKB
  8. plasma membrane Source: UniProtKB
  9. proton-transporting V-type ATPase, V1 domain Source: InterPro
  10. ruffle Source: UniProt
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 511511V-type proton ATPase subunit B, brain isoformUniRule annotationPRO_0000144627Add
BLAST

Proteomic databases

MaxQBiP62814.
PaxDbiP62814.
PRIDEiP62814.

2D gel databases

REPRODUCTION-2DPAGEP62814.
UCD-2DPAGEP62814.

PTM databases

PhosphoSiteiP62814.

Expressioni

Gene expression databases

ArrayExpressiP62814.
BgeeiP62814.
CleanExiMM_ATP6V1B2.
GenevestigatoriP62814.

Interactioni

Subunit structurei

V-ATPase is a heteromultimeric enzyme composed of a peripheral catalytic V1 complex (main components: subunits A, B, C, D, E, and F) attached to an integral membrane V0 proton pore complex (main component: the proteolipid protein).

Protein-protein interaction databases

BioGridi198262. 1 interaction.
IntActiP62814. 7 interactions.
MINTiMINT-4139762.

Structurei

3D structure databases

ProteinModelPortaliP62814.
SMRiP62814. Positions 55-505.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1156.
GeneTreeiENSGT00550000074724.
HOVERGENiHBG002176.
InParanoidiP62814.
KOiK02147.
OMAiTVCEFTG.
OrthoDBiEOG7NW68Q.
PhylomeDBiP62814.
TreeFamiTF300313.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00310. ATP_synth_B_arch.
InterProiIPR020003. ATPase_a/bsu_AS.
IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR004100. ATPase_F1_a/bsu_N.
IPR005723. ATPase_V1-cplx_bsu.
IPR027417. P-loop_NTPase.
IPR022879. V-ATPase_su_B/beta.
[Graphical view]
PfamiPF00006. ATP-synt_ab. 1 hit.
PF00306. ATP-synt_ab_C. 1 hit.
PF02874. ATP-synt_ab_N. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01040. V-ATPase_V1_B. 1 hit.
PROSITEiPS00152. ATPASE_ALPHA_BETA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62814-1 [UniParc]FASTAAdd to Basket

« Hide

MALRAMRGIV NGAAPELPVP TGGPMAGARE QALAVSRNYL SQPRLTYKTV    50
SGVNGPLVIL DHVKFPRYAE IVHLTLPDGT KRSGQVLEVS GSKAVVQVFE 100
GTSGIDAKKT SCEFTGDILR TPVSEDMLGR VFNGSGKPID RGPVVLAEDF 150
LDIMGQPINP QCRIYPEEMI QTGISAIDGM NSIARGQKIP IFSAAGLPHN 200
EIAAQICRQA GLVKKSKDVV DYSEENFAIV FAAMGVNMET ARFFKSDFEE 250
NGSMDNVCLF LNLANDPTIE RIITPRLALT TAEFLAYQCE KHVLVILTDM 300
SSYAEALREV SAAREEVPGR RGFPGYMYTD LATIYERAGR VEGRNGSITQ 350
IPILTMPNDD ITHPIPDLTG YITEGQIYVD RQLHNRQIYP PINVLPSLSR 400
LMKSAIGEGM TRKDHADVSN QLYACYAIGK DVQAMKAVVG EEALTSDDLL 450
YLEFLQKFEK NFITQGPYEN RTVYETLDIG WQLLRIFPKE MLKRIPQSTL 500
SEFYPRDSAK H 511
Length:511
Mass (Da):56,551
Last modified:August 16, 2004 - v1
Checksum:iE116BF9A36EEF36B
GO

Sequence cautioni

The sequence BAE30303.1 differs from that shown. Reason: Erroneous initiation.
The sequence BAE30526.1 differs from that shown. Reason: Erroneous initiation.
The sequence BAE31441.1 differs from that shown. Reason: Erroneous initiation.

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti22 – 232GG → RP in AAC52411. 1 Publication
Sequence conflicti36 – 361S → G in AAC52411. 1 Publication
Sequence conflicti80 – 801T → A in BAE35206. 1 Publication
Sequence conflicti85 – 862QV → AS in AAC52411. 1 Publication
Sequence conflicti262 – 2643NLA → ILP in AAC52411. 1 Publication
Sequence conflicti270 – 2701E → K in BAE35536. 1 Publication
Sequence conflicti270 – 2701E → K in BAE35612. 1 Publication
Sequence conflicti276 – 2761R → C in AAC52411. 1 Publication
Sequence conflicti300 – 3001M → T in AAC52411. 1 Publication
Sequence conflicti304 – 3041A → P in AAC52411. 1 Publication
Sequence conflicti318 – 3181P → H in BAE35536. 1 Publication
Sequence conflicti318 – 3181P → H in BAE35612. 1 Publication
Sequence conflicti365 – 3651I → M in BAE40674. 1 Publication
Sequence conflicti371 – 3711Y → C in BAE35206. 1 Publication
Sequence conflicti373 – 3731T → I in BAE30303. 1 Publication
Sequence conflicti373 – 3731T → I in BAE30526. 1 Publication
Sequence conflicti405 – 4051A → P in AAC52411. 1 Publication
Sequence conflicti437 – 4371A → V in BAE30197. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U13838 Genomic DNA. Translation: AAC52411.1.
Y12634 mRNA. Translation: CAA73182.1.
AK146499 mRNA. Translation: BAE27215.1.
AK151200 mRNA. Translation: BAE30197.1.
AK151322 mRNA. Translation: BAE30303.1. Different initiation.
AK151586 mRNA. Translation: BAE30526.1. Different initiation.
AK152718 mRNA. Translation: BAE31441.1. Different initiation.
AK152766 mRNA. Translation: BAE31479.1.
AK159133 mRNA. Translation: BAE34845.1.
AK159153 mRNA. Translation: BAE34860.1.
AK159586 mRNA. Translation: BAE35206.1.
AK159701 mRNA. Translation: BAE35300.1.
AK159986 mRNA. Translation: BAE35536.1.
AK160080 mRNA. Translation: BAE35612.1.
AK160854 mRNA. Translation: BAE36047.1.
AK166669 mRNA. Translation: BAE38930.1.
AK168852 mRNA. Translation: BAE40674.1.
AK169155 mRNA. Translation: BAE40934.1.
AK169270 mRNA. Translation: BAE41031.1.
BC012497 mRNA. Translation: AAH12497.1.
BC046302 mRNA. Translation: AAH46302.1.
BC085300 mRNA. Translation: AAH85300.1.
CCDSiCCDS40358.1.
RefSeqiNP_031535.2. NM_007509.3.
UniGeneiMm.249096.

Genome annotation databases

EnsembliENSMUST00000006435; ENSMUSP00000006435; ENSMUSG00000006273.
GeneIDi11966.
KEGGimmu:11966.
UCSCiuc009lww.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U13838 Genomic DNA. Translation: AAC52411.1 .
Y12634 mRNA. Translation: CAA73182.1 .
AK146499 mRNA. Translation: BAE27215.1 .
AK151200 mRNA. Translation: BAE30197.1 .
AK151322 mRNA. Translation: BAE30303.1 . Different initiation.
AK151586 mRNA. Translation: BAE30526.1 . Different initiation.
AK152718 mRNA. Translation: BAE31441.1 . Different initiation.
AK152766 mRNA. Translation: BAE31479.1 .
AK159133 mRNA. Translation: BAE34845.1 .
AK159153 mRNA. Translation: BAE34860.1 .
AK159586 mRNA. Translation: BAE35206.1 .
AK159701 mRNA. Translation: BAE35300.1 .
AK159986 mRNA. Translation: BAE35536.1 .
AK160080 mRNA. Translation: BAE35612.1 .
AK160854 mRNA. Translation: BAE36047.1 .
AK166669 mRNA. Translation: BAE38930.1 .
AK168852 mRNA. Translation: BAE40674.1 .
AK169155 mRNA. Translation: BAE40934.1 .
AK169270 mRNA. Translation: BAE41031.1 .
BC012497 mRNA. Translation: AAH12497.1 .
BC046302 mRNA. Translation: AAH46302.1 .
BC085300 mRNA. Translation: AAH85300.1 .
CCDSi CCDS40358.1.
RefSeqi NP_031535.2. NM_007509.3.
UniGenei Mm.249096.

3D structure databases

ProteinModelPortali P62814.
SMRi P62814. Positions 55-505.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 198262. 1 interaction.
IntActi P62814. 7 interactions.
MINTi MINT-4139762.

Protein family/group databases

TCDBi 3.A.2.2.6. the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily.

PTM databases

PhosphoSitei P62814.

2D gel databases

REPRODUCTION-2DPAGE P62814.
UCD-2DPAGE P62814.

Proteomic databases

MaxQBi P62814.
PaxDbi P62814.
PRIDEi P62814.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000006435 ; ENSMUSP00000006435 ; ENSMUSG00000006273 .
GeneIDi 11966.
KEGGi mmu:11966.
UCSCi uc009lww.2. mouse.

Organism-specific databases

CTDi 526.
MGIi MGI:109618. Atp6v1b2.

Phylogenomic databases

eggNOGi COG1156.
GeneTreei ENSGT00550000074724.
HOVERGENi HBG002176.
InParanoidi P62814.
KOi K02147.
OMAi TVCEFTG.
OrthoDBi EOG7NW68Q.
PhylomeDBi P62814.
TreeFami TF300313.

Enzyme and pathway databases

Reactomei REACT_198345. Phagosomal maturation (early endosomal stage).
REACT_198515. Transferrin endocytosis and recycling.

Miscellaneous databases

ChiTaRSi ATP6V1B2. mouse.
NextBioi 280091.
PROi P62814.
SOURCEi Search...

Gene expression databases

ArrayExpressi P62814.
Bgeei P62814.
CleanExi MM_ATP6V1B2.
Genevestigatori P62814.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
HAMAPi MF_00310. ATP_synth_B_arch.
InterProi IPR020003. ATPase_a/bsu_AS.
IPR000793. ATPase_F1/V1/A1-cplx_a/bsu_C.
IPR000194. ATPase_F1/V1/A1_a/bsu_nucl-bd.
IPR004100. ATPase_F1_a/bsu_N.
IPR005723. ATPase_V1-cplx_bsu.
IPR027417. P-loop_NTPase.
IPR022879. V-ATPase_su_B/beta.
[Graphical view ]
Pfami PF00006. ATP-synt_ab. 1 hit.
PF00306. ATP-synt_ab_C. 1 hit.
PF02874. ATP-synt_ab_N. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR01040. V-ATPase_V1_B. 1 hit.
PROSITEi PS00152. ATPASE_ALPHA_BETA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Resorption-cycle-dependent polarization of mRNAs for different subunits of V-ATPase in bone-resorbing osteoclasts."
    Laitala T., Howell M.L., Dean G.E., Vaananen H.K.
    Mol. Biol. Cell 7:129-142(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Antisense technology and bone resorption."
    Westberg M.S., Lundberg L.G.
    Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: BALB/c.
    Tissue: Brain.
  3. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Amnion, Bone marrow, Brain and Heart.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Eye and Olfactory epithelium.
  5. Lubec G., Klug S., Yang J.W., Zigmond M., Kang S.U., Sunyer B., Chen W.-Q.
    Submitted (JAN-2009) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 49-64; 68-130; 164-185; 189-208; 277-308; 322-337; 387-400; 404-430; 437-457; 461-485 AND 495-506, IDENTIFICATION BY MASS SPECTROMETRY.
    Strain: C57BL/6 and OF1.
    Tissue: Brain and Hippocampus.

Entry informationi

Entry nameiVATB2_MOUSE
AccessioniPrimary (citable) accession number: P62814
Secondary accession number(s): O09045
, P50517, Q3TG74, Q3TL62, Q3TVK6, Q3TWR0, Q3U791, Q3U7C8, Q3U9Z0, Q3UAW7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: August 16, 2004
Last modified: September 3, 2014
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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