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Protein

30S ribosomal protein S9

Gene

rpsI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Part of the top of the head of the 30S subunit. The C-terminal region penetrates the head emerging in the P-site where it contacts tRNA (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1112-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S9
Gene namesi
Name:rpsI
Synonyms:rps9
Ordered Locus Names:TT_C1100
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12812830S ribosomal protein S9PRO_0000111430Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S7 and S10 (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC1100.

Structurei

Secondary structure

1
128
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 63Combined sources
Beta strandi13 – 2311Combined sources
Beta strandi26 – 327Combined sources
Helixi33 – 364Combined sources
Beta strandi37 – 393Combined sources
Helixi43 – 475Combined sources
Helixi48 – 536Combined sources
Beta strandi56 – 583Combined sources
Beta strandi59 – 6810Combined sources
Helixi70 – 8819Combined sources
Helixi90 – 923Combined sources
Helixi93 – 964Combined sources
Turni97 – 1026Combined sources
Beta strandi114 – 1185Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1I94X-ray3.20I1-128[»]
1I96X-ray4.20I1-128[»]
1TWTmodel-L1-128[»]
2R1Gelectron microscopy12.50G2-128[»]
2UXBX-ray3.10I1-128[»]
2UXCX-ray2.90I1-128[»]
2UXDX-ray3.20I1-128[»]
2VQEX-ray2.50I1-128[»]
2VQFX-ray2.90I1-128[»]
3T1HX-ray3.11I1-128[»]
3T1YX-ray2.80I1-128[»]
4KVBX-ray4.20I1-128[»]
4V4IX-ray3.71j1-128[»]
4V4JX-ray3.83j1-128[»]
4V51X-ray2.80AI/CI1-128[»]
4V5AX-ray3.50AI/CI1-128[»]
4V5CX-ray3.30AI/CI1-128[»]
4V5DX-ray3.50AI/CI1-128[»]
4V5EX-ray3.45AI/CI1-128[»]
4V63X-ray3.21AI/CI1-128[»]
4V67X-ray3.00AI/CI1-128[»]
4V7PX-ray3.62AI/DI2-128[»]
4V83X-ray3.50AI/CI2-128[»]
4V84X-ray3.40AI/CI2-128[»]
4V9JX-ray3.86AI/CI2-128[»]
4V9KX-ray3.50AI/CI2-128[»]
4V9LX-ray3.50AI/CI2-128[»]
4V9MX-ray4.00AI/CI2-128[»]
4V9NX-ray3.40AI/CI2-128[»]
4V9QX-ray3.40BI/DI2-128[»]
4W29X-ray3.80AI/CI2-128[»]
4XEJX-ray3.80AS09/BS092-128[»]
ProteinModelPortaliP62669.
SMRiP62669. Positions 2-128.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62669.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S9P family.Curated

Phylogenomic databases

eggNOGiCOG0103.
KOiK02996.
OMAiIKQGAAR.
OrthoDBiEOG6MWNH0.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
HAMAPiMF_00532_B. Ribosomal_S9_B.
InterProiIPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR023035. Ribosomal_S9_bac/plastid.
IPR020574. Ribosomal_S9_CS.
[Graphical view]
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiPF00380. Ribosomal_S9. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiPS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62669-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQYYGTGRR KEAVARVFLR PGNGKVTVNG QDFNEYFQGL VRAVAALEPL
60 70 80 90 100
RAVDALGRFD AYITVRGGGK SGQIDAIKLG IARALVQYNP DYRAKLKPLG
110 120
FLTRDARVVE RKKYGKHKAR RAPQYSKR
Length:128
Mass (Da):14,402
Last modified:July 19, 2004 - v1
Checksum:i7886A020CC5D9934
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ409331 Genomic DNA. Translation: CAC35063.1.
AE017221 Genomic DNA. Translation: AAS81442.1.
RefSeqiWP_008632991.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81442; AAS81442; TT_C1100.
KEGGitth:TTC1100.
PATRICi23952603. VBITheThe54392_1092.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ409331 Genomic DNA. Translation: CAC35063.1.
AE017221 Genomic DNA. Translation: AAS81442.1.
RefSeqiWP_008632991.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1I94X-ray3.20I1-128[»]
1I96X-ray4.20I1-128[»]
1TWTmodel-L1-128[»]
2R1Gelectron microscopy12.50G2-128[»]
2UXBX-ray3.10I1-128[»]
2UXCX-ray2.90I1-128[»]
2UXDX-ray3.20I1-128[»]
2VQEX-ray2.50I1-128[»]
2VQFX-ray2.90I1-128[»]
3T1HX-ray3.11I1-128[»]
3T1YX-ray2.80I1-128[»]
4KVBX-ray4.20I1-128[»]
4V4IX-ray3.71j1-128[»]
4V4JX-ray3.83j1-128[»]
4V51X-ray2.80AI/CI1-128[»]
4V5AX-ray3.50AI/CI1-128[»]
4V5CX-ray3.30AI/CI1-128[»]
4V5DX-ray3.50AI/CI1-128[»]
4V5EX-ray3.45AI/CI1-128[»]
4V63X-ray3.21AI/CI1-128[»]
4V67X-ray3.00AI/CI1-128[»]
4V7PX-ray3.62AI/DI2-128[»]
4V83X-ray3.50AI/CI2-128[»]
4V84X-ray3.40AI/CI2-128[»]
4V9JX-ray3.86AI/CI2-128[»]
4V9KX-ray3.50AI/CI2-128[»]
4V9LX-ray3.50AI/CI2-128[»]
4V9MX-ray4.00AI/CI2-128[»]
4V9NX-ray3.40AI/CI2-128[»]
4V9QX-ray3.40BI/DI2-128[»]
4W29X-ray3.80AI/CI2-128[»]
4XEJX-ray3.80AS09/BS092-128[»]
ProteinModelPortaliP62669.
SMRiP62669. Positions 2-128.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1100.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81442; AAS81442; TT_C1100.
KEGGitth:TTC1100.
PATRICi23952603. VBITheThe54392_1092.

Phylogenomic databases

eggNOGiCOG0103.
KOiK02996.
OMAiIKQGAAR.
OrthoDBiEOG6MWNH0.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1112-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62669.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
HAMAPiMF_00532_B. Ribosomal_S9_B.
InterProiIPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR023035. Ribosomal_S9_bac/plastid.
IPR020574. Ribosomal_S9_CS.
[Graphical view]
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiPF00380. Ribosomal_S9. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiPS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3."
    Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F.
    EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS9_THET2
AccessioniPrimary (citable) accession number: P62669
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: July 19, 2004
Last modified: July 22, 2015
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.