30S ribosomal protein S9 - Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)

Contribute

Read comments (?) or add your own

P62669 (RS9_THET2) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 68. History...

Clusters with 100%, 90%, 50% identity |

Documents (3) |

Third-party data

text xml rdf/xml gff fasta

to top of page

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

to top of page

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents Customize order

Names and origin

Protein names

Recommended name:
30S ribosomal protein S9

Gene names

Name:	rpsI
Synonyms:	rps9
Ordered Locus Names:	TT_C1100

Organism

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length	128 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Part of the top of the head of the 30S subunit. The C-terminal region penetrates the head emerging in the P-site where it contacts tRNA By similarity. HAMAP-Rule MF_00532_B
Subunit structure	Part of the 30S ribosomal subunit. Contacts proteins S7 and S10 By similarity.
Sequence similarities	Belongs to the ribosomal protein S9P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding tRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro tRNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

128

30S ribosomal protein S9 HAMAP-Rule MF_00532_B

PRO_0000111430

Secondary structure

1

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

.

128

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P62669 [UniParc].

Last modified July 19, 2004. Version 1.
Checksum: 7886A020CC5D9934
Show »

128

14,402

        10         20         30         40         50         60 
MEQYYGTGRR KEAVARVFLR PGNGKVTVNG QDFNEYFQGL VRAVAALEPL RAVDALGRFD 

        70         80         90        100        110        120 
AYITVRGGGK SGQIDAIKLG IARALVQYNP DYRAKLKPLG FLTRDARVVE RKKYGKHKAR 


RAPQYSKR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3." Pioletti M., Schluenzen F., Harms J., Zarivach R., Gluehmann M., Avila H., Bashan A., Bartels H., Auerbach T., Jacobi C., Hartsch T., Yonath A., Franceschi F. EMBO J. 20:1829-1839(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"The genome sequence of the extreme thermophile Thermus thermophilus." Henne A., Brueggemann H., Raasch C., Wiezer A., Hartsch T., Liesegang H., Johann A., Lienard T., Gohl O., Martinez-Arias R., Jacobi C., Starkuviene V., Schlenczeck S., Dencker S., Huber R., Klenk H.-P., Kramer W., Merkl R., Gottschalk G., Fritz H.-J. Nat. Biotechnol. 22:547-553(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HB27 / ATCC BAA-163 / DSM 7039.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AJ409331 Genomic DNA. Translation: CAC35063.1.
AE017221 Genomic DNA. Translation: AAS81442.1.

RefSeq

YP_005069.1. NC_005835.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1I94	X-ray	3.20	I	1-128	[»]
1I96	X-ray	4.20	I	1-128	[»]
1TWT	model	-	L	1-128	[»]
2J00	X-ray	2.80	I	1-128	[»]
2J02	X-ray	2.80	I	1-128	[»]
2OW8	X-ray	3.71	j	1-128	[»]
2QNH	X-ray	3.83	j	1-128	[»]
2R1G	electron microscopy	12.50	G	2-128	[»]
2UXB	X-ray	3.10	I	1-128	[»]
2UXC	X-ray	2.90	I	1-128	[»]
2UXD	X-ray	3.20	I	1-128	[»]
2V46	X-ray	3.80	I	1-128	[»]
2V48	X-ray	3.80	I	1-128	[»]
2VQE	X-ray	2.50	I	1-128	[»]
2VQF	X-ray	2.90	I	1-128	[»]
2WDG	X-ray	3.30	I	1-128	[»]
2WDH	X-ray	3.30	I	1-128	[»]
2WDK	X-ray	3.50	I	1-128	[»]
2WDM	X-ray	3.50	I	1-128	[»]
2WH1	X-ray	3.45	I	1-128	[»]
2WH3	X-ray	3.45	I	1-128	[»]
3D5A	X-ray	3.21	I	1-128	[»]
3D5C	X-ray	3.21	I	1-128	[»]
3F1E	X-ray	3.00	I	1-128	[»]
3F1G	X-ray	3.00	I	1-128	[»]
3MR8	X-ray	3.62	I	2-128	[»]
3MS0	X-ray	3.62	I	2-128	[»]
3PYN	X-ray	3.50	I	2-128	[»]
3PYQ	X-ray	3.50	I	2-128	[»]
3PYS	X-ray	3.40	I	2-128	[»]
3PYU	X-ray	3.40	I	2-128	[»]
3T1H	X-ray	3.11	I	1-128	[»]
3T1Y	X-ray	2.80	I	1-128	[»]

ProteinModelPortal

SMR

P62669. Positions 2-128.

ModBase

Protein-protein interaction databases

STRING

262724.TTC1100.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAS81442; AAS81442; TT_C1100.

GeneID

KEGG

PATRIC

23952603. VBITheThe54392_1092.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

KO

OMA

ProtClustDB

Family and domain databases

Gene3D

3.30.230.10. 1 hit.

HAMAP

MF_00532_B. Ribosomal_S9_B.

InterPro

IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR023035. Ribosomal_S9_bac/plastid.
IPR020574. Ribosomal_S9_CS.
[Graphical view]

PANTHER

PTHR21569. PTHR21569. 1 hit.

Pfam

PF00380. Ribosomal_S9. 1 hit.
[Graphical view]

SUPFAM

SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.

PROSITE

PS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view]

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

RS9_THET2

Accession

Primary (citable) accession number: P62669

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 19, 2004
Last sequence update:	July 19, 2004
Last modified:	May 1, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of page

Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents