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Protein

30S ribosomal protein S9

Gene

rpsI

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Part of the top of the head of the 30S subunit. The C-terminal region penetrates the head emerging in the P-site where it contacts tRNA (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S9
Gene namesi
Name:rpsI
Synonyms:rps9
Ordered Locus Names:TT_C1100
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185. 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001114301 – 12830S ribosomal protein S9Add BLAST128

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S7 and S10 (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC1100.

Structurei

Secondary structure

1128
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Beta strandi13 – 23Combined sources11
Beta strandi26 – 32Combined sources7
Helixi33 – 36Combined sources4
Beta strandi37 – 39Combined sources3
Helixi43 – 47Combined sources5
Helixi48 – 53Combined sources6
Beta strandi56 – 58Combined sources3
Beta strandi59 – 68Combined sources10
Helixi70 – 88Combined sources19
Helixi90 – 92Combined sources3
Helixi93 – 96Combined sources4
Turni97 – 102Combined sources6
Beta strandi114 – 118Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1I94X-ray3.20I1-128[»]
1I96X-ray4.20I1-128[»]
1TWTmodel-L1-128[»]
2R1Gelectron microscopy12.50G2-128[»]
2UXBX-ray3.10I1-128[»]
2UXCX-ray2.90I1-128[»]
2UXDX-ray3.20I1-128[»]
2VQEX-ray2.50I1-128[»]
2VQFX-ray2.90I1-128[»]
3T1HX-ray3.11I1-128[»]
3T1YX-ray2.80I1-128[»]
4KVBX-ray4.20I1-128[»]
4V4IX-ray3.71j1-128[»]
4V4JX-ray3.83j1-128[»]
4V51X-ray2.80AI/CI1-128[»]
4V5AX-ray3.50AI/CI1-128[»]
4V5CX-ray3.30AI/CI1-128[»]
4V5DX-ray3.50AI/CI1-128[»]
4V63X-ray3.21AI/CI1-128[»]
4V67X-ray3.00AI/CI1-128[»]
4V7PX-ray3.62AI/DI2-128[»]
4V83X-ray3.50AI/CI2-128[»]
4V84X-ray3.40AI/CI2-128[»]
4V9JX-ray3.86AI/CI2-128[»]
4V9KX-ray3.50AI/CI2-128[»]
4V9LX-ray3.50AI/CI2-128[»]
4V9MX-ray4.00AI/CI2-128[»]
4V9NX-ray3.40AI/CI2-128[»]
4V9QX-ray3.40BI/DI2-128[»]
4W29X-ray3.80AI/CI2-128[»]
4XEJX-ray3.80AS09/BS092-128[»]
5J4DX-ray3.10RA/WC1-128[»]
ProteinModelPortaliP62669.
SMRiP62669.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62669.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108UJD. Bacteria.
COG0103. LUCA.
KOiK02996.
OMAiMVERKKF.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
HAMAPiMF_00532_B. Ribosomal_S9_B. 1 hit.
InterProiView protein in InterPro
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR023035. Ribosomal_S9_bac/plastid.
IPR020574. Ribosomal_S9_CS.
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiView protein in Pfam
PF00380. Ribosomal_S9. 1 hit.
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiView protein in PROSITE
PS00360. RIBOSOMAL_S9. 1 hit.

Sequencei

Sequence statusi: Complete.

P62669-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQYYGTGRR KEAVARVFLR PGNGKVTVNG QDFNEYFQGL VRAVAALEPL
60 70 80 90 100
RAVDALGRFD AYITVRGGGK SGQIDAIKLG IARALVQYNP DYRAKLKPLG
110 120
FLTRDARVVE RKKYGKHKAR RAPQYSKR
Length:128
Mass (Da):14,402
Last modified:July 19, 2004 - v1
Checksum:i7886A020CC5D9934
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ409331 Genomic DNA. Translation: CAC35063.1.
AE017221 Genomic DNA. Translation: AAS81442.1.
RefSeqiWP_008632991.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81442; AAS81442; TT_C1100.
KEGGitth:TT_C1100.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS9_THET2
AccessioniPrimary (citable) accession number: P62669
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: July 19, 2004
Last modified: June 7, 2017
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families