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Protein

30S ribosomal protein S8

Gene

rpsH

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S8
Gene namesi
Name:rpsH
Synonyms:rps8
Ordered Locus Names:TT_C1314
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001265101 – 13830S ribosomal protein S8Add BLAST138

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts proteins S5 and S12 (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC1314.

Structurei

Secondary structure

1138
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 17Combined sources13
Turni18 – 20Combined sources3
Beta strandi22 – 24Combined sources3
Helixi30 – 41Combined sources12
Beta strandi44 – 55Combined sources12
Beta strandi57 – 63Combined sources7
Beta strandi71 – 73Combined sources3
Beta strandi78 – 80Combined sources3
Beta strandi82 – 85Combined sources4
Beta strandi89 – 91Combined sources3
Helixi97 – 99Combined sources3
Helixi103 – 106Combined sources4
Beta strandi108 – 114Combined sources7
Beta strandi117 – 119Combined sources3
Helixi121 – 127Combined sources7
Beta strandi131 – 133Combined sources3
Beta strandi135 – 138Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20H1-138[»]
4V4IX-ray3.71i1-138[»]
4V4JX-ray3.83i1-138[»]
4V63X-ray3.21AH/CH1-138[»]
4V67X-ray3.00AH/CH1-138[»]
4V7PX-ray3.62AH/DH1-138[»]
4V83X-ray3.50AH/CH1-138[»]
4V84X-ray3.40AH/CH1-138[»]
4V9JX-ray3.86AH/CH1-138[»]
4V9KX-ray3.50AH/CH1-138[»]
4V9LX-ray3.50AH/CH1-138[»]
4V9MX-ray4.00AH/CH1-138[»]
4V9NX-ray3.40AH/CH1-138[»]
4V9QX-ray3.40BH/DH1-138[»]
4W29X-ray3.80AH/CH1-138[»]
4XEJX-ray3.80AS08/BS081-138[»]
5J4DX-ray3.10QA/VC1-138[»]
ProteinModelPortaliP62668.
SMRiP62668.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62668.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8P family.Curated

Phylogenomic databases

eggNOGiENOG4108UJY. Bacteria.
COG0096. LUCA.
KOiK02994.
OMAiRIYKNTR.

Family and domain databases

HAMAPiMF_01302_B. Ribosomal_S8_B. 1 hit.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62668-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTDPIADML TRIRNATRVY KESTDVPASR FKEEILRILA REGFIKGYER
60 70 80 90 100
VDVDGKPYLR VYLKYGPRRQ GPDPRPEQVI HHIRRISKPG RRVYVGVKEI
110 120 130
PRVRRGLGIA ILSTSKGVLT DREARKLGVG GELICEVW
Length:138
Mass (Da):15,838
Last modified:July 19, 2004 - v1
Checksum:i49CC858AD1E4DB5A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81656.1.
RefSeqiWP_011173705.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS81656; AAS81656; TT_C1314.
KEGGitth:TT_C1314.
PATRICi23953035. VBITheThe54392_1306.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS81656.1.
RefSeqiWP_011173705.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20H1-138[»]
4V4IX-ray3.71i1-138[»]
4V4JX-ray3.83i1-138[»]
4V63X-ray3.21AH/CH1-138[»]
4V67X-ray3.00AH/CH1-138[»]
4V7PX-ray3.62AH/DH1-138[»]
4V83X-ray3.50AH/CH1-138[»]
4V84X-ray3.40AH/CH1-138[»]
4V9JX-ray3.86AH/CH1-138[»]
4V9KX-ray3.50AH/CH1-138[»]
4V9LX-ray3.50AH/CH1-138[»]
4V9MX-ray4.00AH/CH1-138[»]
4V9NX-ray3.40AH/CH1-138[»]
4V9QX-ray3.40BH/DH1-138[»]
4W29X-ray3.80AH/CH1-138[»]
4XEJX-ray3.80AS08/BS081-138[»]
5J4DX-ray3.10QA/VC1-138[»]
ProteinModelPortaliP62668.
SMRiP62668.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1314.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS81656; AAS81656; TT_C1314.
KEGGitth:TT_C1314.
PATRICi23953035. VBITheThe54392_1306.

Phylogenomic databases

eggNOGiENOG4108UJY. Bacteria.
COG0096. LUCA.
KOiK02994.
OMAiRIYKNTR.

Miscellaneous databases

EvolutionaryTraceiP62668.

Family and domain databases

HAMAPiMF_01302_B. Ribosomal_S8_B. 1 hit.
InterProiIPR000630. Ribosomal_S8.
[Graphical view]
PANTHERiPTHR11758. PTHR11758. 1 hit.
PfamiPF00410. Ribosomal_S8. 1 hit.
[Graphical view]
SUPFAMiSSF56047. SSF56047. 1 hit.
PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS8_THET2
AccessioniPrimary (citable) accession number: P62668
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: July 19, 2004
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.