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P62668

- RS8_THET2

UniProt

P62668 - RS8_THET2

Protein

30S ribosomal protein S8

Gene

rpsH

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (19 Jul 2004)
      Previous versions | rss
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    Functioni

    One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1329-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S8
    Gene namesi
    Name:rpsH
    Synonyms:rps8
    Ordered Locus Names:TT_C1314
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 13813830S ribosomal protein S8PRO_0000126510Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Contacts proteins S5 and S12 By similarity.By similarity

    Structurei

    Secondary structure

    1
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Helixi5 – 1713
    Turni18 – 203
    Beta strandi22 – 243
    Helixi30 – 4112
    Beta strandi44 – 5512
    Beta strandi57 – 637
    Beta strandi71 – 733
    Beta strandi78 – 803
    Beta strandi82 – 854
    Beta strandi89 – 913
    Helixi97 – 993
    Helixi103 – 1064
    Beta strandi108 – 1147
    Beta strandi117 – 1193
    Helixi121 – 1277
    Beta strandi131 – 1333
    Beta strandi135 – 1384

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2QNHX-ray3.83i1-138[»]
    3D5AX-ray3.21H1-138[»]
    3D5CX-ray3.21H1-138[»]
    3F1EX-ray3.00H1-138[»]
    3F1GX-ray3.00H1-138[»]
    3MR8X-ray3.62H1-138[»]
    3MS0X-ray3.62H1-138[»]
    3PYNX-ray3.50H1-138[»]
    3PYQX-ray3.50H1-138[»]
    3PYSX-ray3.40H1-138[»]
    3PYUX-ray3.40H1-138[»]
    4KBTX-ray3.86H1-138[»]
    4KBVX-ray3.86H1-138[»]
    4KCYX-ray3.50H1-138[»]
    4KD0X-ray3.50H1-138[»]
    4KD8X-ray3.50H1-138[»]
    4KDAX-ray3.50H1-138[»]
    4KDGX-ray4.00H1-138[»]
    4KDJX-ray4.00H1-138[»]
    4KFHX-ray3.40H1-138[»]
    4KFKX-ray3.40H1-138[»]
    4KVBX-ray4.20H1-138[»]
    4L6KX-ray3.40H1-138[»]
    4L6MX-ray3.40H1-138[»]
    ProteinModelPortaliP62668.
    SMRiP62668. Positions 1-138.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62668.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S8P family.Curated

    Phylogenomic databases

    eggNOGiCOG0096.
    KOiK02994.
    OMAiYKGHGAI.
    OrthoDBiEOG6Z0QH1.

    Family and domain databases

    HAMAPiMF_01302_B. Ribosomal_S8_B.
    InterProiIPR000630. Ribosomal_S8.
    [Graphical view]
    PANTHERiPTHR11758. PTHR11758. 1 hit.
    PfamiPF00410. Ribosomal_S8. 1 hit.
    [Graphical view]
    SUPFAMiSSF56047. SSF56047. 1 hit.
    PROSITEiPS00053. RIBOSOMAL_S8. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P62668-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLTDPIADML TRIRNATRVY KESTDVPASR FKEEILRILA REGFIKGYER    50
    VDVDGKPYLR VYLKYGPRRQ GPDPRPEQVI HHIRRISKPG RRVYVGVKEI 100
    PRVRRGLGIA ILSTSKGVLT DREARKLGVG GELICEVW 138
    Length:138
    Mass (Da):15,838
    Last modified:July 19, 2004 - v1
    Checksum:i49CC858AD1E4DB5A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81656.1.
    RefSeqiYP_005283.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS81656; AAS81656; TT_C1314.
    GeneIDi2775861.
    KEGGitth:TTC1314.
    PATRICi23953035. VBITheThe54392_1306.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS81656.1 .
    RefSeqi YP_005283.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2QNH X-ray 3.83 i 1-138 [» ]
    3D5A X-ray 3.21 H 1-138 [» ]
    3D5C X-ray 3.21 H 1-138 [» ]
    3F1E X-ray 3.00 H 1-138 [» ]
    3F1G X-ray 3.00 H 1-138 [» ]
    3MR8 X-ray 3.62 H 1-138 [» ]
    3MS0 X-ray 3.62 H 1-138 [» ]
    3PYN X-ray 3.50 H 1-138 [» ]
    3PYQ X-ray 3.50 H 1-138 [» ]
    3PYS X-ray 3.40 H 1-138 [» ]
    3PYU X-ray 3.40 H 1-138 [» ]
    4KBT X-ray 3.86 H 1-138 [» ]
    4KBV X-ray 3.86 H 1-138 [» ]
    4KCY X-ray 3.50 H 1-138 [» ]
    4KD0 X-ray 3.50 H 1-138 [» ]
    4KD8 X-ray 3.50 H 1-138 [» ]
    4KDA X-ray 3.50 H 1-138 [» ]
    4KDG X-ray 4.00 H 1-138 [» ]
    4KDJ X-ray 4.00 H 1-138 [» ]
    4KFH X-ray 3.40 H 1-138 [» ]
    4KFK X-ray 3.40 H 1-138 [» ]
    4KVB X-ray 4.20 H 1-138 [» ]
    4L6K X-ray 3.40 H 1-138 [» ]
    4L6M X-ray 3.40 H 1-138 [» ]
    ProteinModelPortali P62668.
    SMRi P62668. Positions 1-138.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS81656 ; AAS81656 ; TT_C1314 .
    GeneIDi 2775861.
    KEGGi tth:TTC1314.
    PATRICi 23953035. VBITheThe54392_1306.

    Phylogenomic databases

    eggNOGi COG0096.
    KOi K02994.
    OMAi YKGHGAI.
    OrthoDBi EOG6Z0QH1.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1329-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62668.

    Family and domain databases

    HAMAPi MF_01302_B. Ribosomal_S8_B.
    InterProi IPR000630. Ribosomal_S8.
    [Graphical view ]
    PANTHERi PTHR11758. PTHR11758. 1 hit.
    Pfami PF00410. Ribosomal_S8. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56047. SSF56047. 1 hit.
    PROSITEi PS00053. RIBOSOMAL_S8. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS8_THET2
    AccessioniPrimary (citable) accession number: P62668
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: July 19, 2004
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3