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P62666

- RS6_THET2

UniProt

P62666 - RS6_THET2

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Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Located on the outer edge of the platform on the body of the 30S subunit.By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1778-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6
Gene namesi
Name:rpsF
Synonyms:rps6
Ordered Locus Names:TT_C1740
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10110130S ribosomal protein S6PRO_0000176862Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18 (By similarity).By similarity

Structurei

Secondary structure

1
101
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 109Combined sources
Beta strandi12 – 143Combined sources
Helixi16 – 3217Combined sources
Beta strandi36 – 405Combined sources
Beta strandi47 – 526Combined sources
Beta strandi55 – 573Combined sources
Beta strandi59 – 624Combined sources
Beta strandi65 – 673Combined sources
Helixi69 – 713Combined sources
Helixi72 – 809Combined sources
Beta strandi82 – 843Combined sources
Beta strandi85 – 928Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2QNHX-ray3.83g1-101[»]
3D5AX-ray3.21F1-101[»]
3D5CX-ray3.21F1-101[»]
3F1EX-ray3.00F1-101[»]
3F1GX-ray3.00F1-101[»]
3MR8X-ray3.62F1-101[»]
3MS0X-ray3.62F1-101[»]
3PYNX-ray3.50F1-101[»]
3PYQX-ray3.50F1-101[»]
3PYSX-ray3.40F1-101[»]
3PYUX-ray3.40F1-101[»]
4KBTX-ray3.86F1-101[»]
4KBVX-ray3.86F1-101[»]
4KCYX-ray3.50F1-101[»]
4KD0X-ray3.50F1-101[»]
4KD8X-ray3.50F1-101[»]
4KDAX-ray3.50F1-101[»]
4KDGX-ray4.00F1-101[»]
4KDJX-ray4.00F1-101[»]
4KFHX-ray3.40F1-101[»]
4KFKX-ray3.40F1-101[»]
4KVBX-ray4.20F1-101[»]
4L6KX-ray3.40F1-101[»]
4L6MX-ray3.40F1-101[»]
4QS0X-ray3.80F1-101[»]
4QS2X-ray3.80F1-101[»]
ProteinModelPortaliP62666.
SMRiP62666. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62666.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S6P family.Curated

Phylogenomic databases

eggNOGiCOG0360.
KOiK02990.
OMAiKACERRR.
OrthoDBiEOG6P33DH.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
PROSITEiPS01048. RIBOSOMAL_S6. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62666-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY
60 70 80 90 100
PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN

A
Length:101
Mass (Da):11,973
Last modified:July 19, 2004 - v1
Checksum:i4FEE8005C74902E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82082.1.
RefSeqiYP_005709.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82082; AAS82082; TT_C1740.
GeneIDi2775242.
KEGGitth:TTC1740.
PATRICi23953947. VBITheThe54392_1739.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82082.1 .
RefSeqi YP_005709.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2QNH X-ray 3.83 g 1-101 [» ]
3D5A X-ray 3.21 F 1-101 [» ]
3D5C X-ray 3.21 F 1-101 [» ]
3F1E X-ray 3.00 F 1-101 [» ]
3F1G X-ray 3.00 F 1-101 [» ]
3MR8 X-ray 3.62 F 1-101 [» ]
3MS0 X-ray 3.62 F 1-101 [» ]
3PYN X-ray 3.50 F 1-101 [» ]
3PYQ X-ray 3.50 F 1-101 [» ]
3PYS X-ray 3.40 F 1-101 [» ]
3PYU X-ray 3.40 F 1-101 [» ]
4KBT X-ray 3.86 F 1-101 [» ]
4KBV X-ray 3.86 F 1-101 [» ]
4KCY X-ray 3.50 F 1-101 [» ]
4KD0 X-ray 3.50 F 1-101 [» ]
4KD8 X-ray 3.50 F 1-101 [» ]
4KDA X-ray 3.50 F 1-101 [» ]
4KDG X-ray 4.00 F 1-101 [» ]
4KDJ X-ray 4.00 F 1-101 [» ]
4KFH X-ray 3.40 F 1-101 [» ]
4KFK X-ray 3.40 F 1-101 [» ]
4KVB X-ray 4.20 F 1-101 [» ]
4L6K X-ray 3.40 F 1-101 [» ]
4L6M X-ray 3.40 F 1-101 [» ]
4QS0 X-ray 3.80 F 1-101 [» ]
4QS2 X-ray 3.80 F 1-101 [» ]
ProteinModelPortali P62666.
SMRi P62666. Positions 1-101.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAS82082 ; AAS82082 ; TT_C1740 .
GeneIDi 2775242.
KEGGi tth:TTC1740.
PATRICi 23953947. VBITheThe54392_1739.

Phylogenomic databases

eggNOGi COG0360.
KOi K02990.
OMAi KACERRR.
OrthoDBi EOG6P33DH.

Enzyme and pathway databases

BioCyci TTHE262724:GCAT-1778-MONOMER.

Miscellaneous databases

EvolutionaryTracei P62666.

Family and domain databases

Gene3Di 3.30.70.60. 1 hit.
HAMAPi MF_00360. Ribosomal_S6.
InterProi IPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view ]
Pfami PF01250. Ribosomal_S6. 1 hit.
[Graphical view ]
SUPFAMi SSF54995. SSF54995. 1 hit.
TIGRFAMsi TIGR00166. S6. 1 hit.
PROSITEi PS01048. RIBOSOMAL_S6. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS6_THET2
AccessioniPrimary (citable) accession number: P62666
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: July 19, 2004
Last modified: November 26, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3