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Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Located on the outer edge of the platform on the body of the 30S subunit.By similarity

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1778-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6
Gene namesi
Name:rpsF
Synonyms:rps6
Ordered Locus Names:TT_C1740
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10110130S ribosomal protein S6PRO_0000176862Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18 (By similarity).By similarity

Structurei

Secondary structure

1
101
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 109Combined sources
Beta strandi12 – 143Combined sources
Helixi16 – 3217Combined sources
Beta strandi36 – 405Combined sources
Beta strandi47 – 526Combined sources
Beta strandi55 – 573Combined sources
Beta strandi59 – 624Combined sources
Beta strandi65 – 673Combined sources
Helixi69 – 713Combined sources
Helixi72 – 809Combined sources
Beta strandi82 – 843Combined sources
Beta strandi85 – 928Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20F1-101[»]
4V4IX-ray3.71g1-101[»]
4V4JX-ray3.83g1-101[»]
4V63X-ray3.21AF/CF1-101[»]
4V67X-ray3.00AF/CF1-101[»]
4V7PX-ray3.62AF/DF1-101[»]
4V83X-ray3.50AF/CF1-101[»]
4V84X-ray3.40AF/CF1-101[»]
4V9JX-ray3.86AF/CF1-101[»]
4V9KX-ray3.50AF/CF1-101[»]
4V9LX-ray3.50AF/CF1-101[»]
4V9MX-ray4.00AF/CF1-101[»]
4V9NX-ray3.40AF/CF1-101[»]
4V9QX-ray3.40BF/DF1-101[»]
4W29X-ray3.80AF/CF1-101[»]
4XEJX-ray3.80AS06/BS061-101[»]
ProteinModelPortaliP62666.
SMRiP62666. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62666.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S6P family.Curated

Phylogenomic databases

eggNOGiCOG0360.
KOiK02990.
OMAiREGYYLM.
OrthoDBiEOG6P33DH.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
PROSITEiPS01048. RIBOSOMAL_S6. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY
60 70 80 90 100
PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN

A
Length:101
Mass (Da):11,973
Last modified:July 19, 2004 - v1
Checksum:i4FEE8005C74902E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82082.1.
RefSeqiYP_005709.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82082; AAS82082; TT_C1740.
KEGGitth:TTC1740.
PATRICi23953947. VBITheThe54392_1739.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82082.1.
RefSeqiYP_005709.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20F1-101[»]
4V4IX-ray3.71g1-101[»]
4V4JX-ray3.83g1-101[»]
4V63X-ray3.21AF/CF1-101[»]
4V67X-ray3.00AF/CF1-101[»]
4V7PX-ray3.62AF/DF1-101[»]
4V83X-ray3.50AF/CF1-101[»]
4V84X-ray3.40AF/CF1-101[»]
4V9JX-ray3.86AF/CF1-101[»]
4V9KX-ray3.50AF/CF1-101[»]
4V9LX-ray3.50AF/CF1-101[»]
4V9MX-ray4.00AF/CF1-101[»]
4V9NX-ray3.40AF/CF1-101[»]
4V9QX-ray3.40BF/DF1-101[»]
4W29X-ray3.80AF/CF1-101[»]
4XEJX-ray3.80AS06/BS061-101[»]
ProteinModelPortaliP62666.
SMRiP62666. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS82082; AAS82082; TT_C1740.
KEGGitth:TTC1740.
PATRICi23953947. VBITheThe54392_1739.

Phylogenomic databases

eggNOGiCOG0360.
KOiK02990.
OMAiREGYYLM.
OrthoDBiEOG6P33DH.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1778-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62666.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
PROSITEiPS01048. RIBOSOMAL_S6. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS6_THET2
AccessioniPrimary (citable) accession number: P62666
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: July 19, 2004
Last modified: April 29, 2015
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.