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P62666

- RS6_THET2

UniProt

P62666 - RS6_THET2

Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
  1. Functioni

    Located on the outer edge of the platform on the body of the 30S subunit.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciTTHE262724:GCAT-1778-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S6
    Gene namesi
    Name:rpsF
    Synonyms:rps6
    Ordered Locus Names:TT_C1740
    OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
    Taxonomic identifieri262724 [NCBI]
    Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
    ProteomesiUP000000592: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 10110130S ribosomal protein S6PRO_0000176862Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18 By similarity.By similarity

    Structurei

    Secondary structure

    1
    101
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi2 – 109
    Beta strandi12 – 143
    Helixi16 – 3217
    Beta strandi36 – 405
    Beta strandi47 – 526
    Beta strandi55 – 573
    Beta strandi59 – 624
    Beta strandi65 – 673
    Helixi69 – 713
    Helixi72 – 809
    Beta strandi82 – 843
    Beta strandi85 – 928

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    2QNHX-ray3.83g1-101[»]
    3D5AX-ray3.21F1-101[»]
    3D5CX-ray3.21F1-101[»]
    3F1EX-ray3.00F1-101[»]
    3F1GX-ray3.00F1-101[»]
    3MR8X-ray3.62F1-101[»]
    3MS0X-ray3.62F1-101[»]
    3PYNX-ray3.50F1-101[»]
    3PYQX-ray3.50F1-101[»]
    3PYSX-ray3.40F1-101[»]
    3PYUX-ray3.40F1-101[»]
    4KBTX-ray3.86F1-101[»]
    4KBVX-ray3.86F1-101[»]
    4KCYX-ray3.50F1-101[»]
    4KD0X-ray3.50F1-101[»]
    4KD8X-ray3.50F1-101[»]
    4KDAX-ray3.50F1-101[»]
    4KDGX-ray4.00F1-101[»]
    4KDJX-ray4.00F1-101[»]
    4KFHX-ray3.40F1-101[»]
    4KFKX-ray3.40F1-101[»]
    4KVBX-ray4.20F1-101[»]
    4L6KX-ray3.40F1-101[»]
    4L6MX-ray3.40F1-101[»]
    ProteinModelPortaliP62666.
    SMRiP62666. Positions 1-101.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiP62666.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S6P family.Curated

    Phylogenomic databases

    eggNOGiCOG0360.
    KOiK02990.
    OMAiKACERRR.
    OrthoDBiEOG6P33DH.

    Family and domain databases

    Gene3Di3.30.70.60. 1 hit.
    HAMAPiMF_00360. Ribosomal_S6.
    InterProiIPR000529. Ribosomal_S6.
    IPR020815. Ribosomal_S6_CS.
    IPR020814. Ribosomal_S6_plastid/chlpt.
    IPR014717. Transl_elong_EF1B/ribosomal_S6.
    [Graphical view]
    PfamiPF01250. Ribosomal_S6. 1 hit.
    [Graphical view]
    SUPFAMiSSF54995. SSF54995. 1 hit.
    TIGRFAMsiTIGR00166. S6. 1 hit.
    PROSITEiPS01048. RIBOSOMAL_S6. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P62666-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY    50
    PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN 100
    A 101
    Length:101
    Mass (Da):11,973
    Last modified:July 19, 2004 - v1
    Checksum:i4FEE8005C74902E5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS82082.1.
    RefSeqiYP_005709.1. NC_005835.1.

    Genome annotation databases

    EnsemblBacteriaiAAS82082; AAS82082; TT_C1740.
    GeneIDi2775242.
    KEGGitth:TTC1740.
    PATRICi23953947. VBITheThe54392_1739.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE017221 Genomic DNA. Translation: AAS82082.1 .
    RefSeqi YP_005709.1. NC_005835.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    2QNH X-ray 3.83 g 1-101 [» ]
    3D5A X-ray 3.21 F 1-101 [» ]
    3D5C X-ray 3.21 F 1-101 [» ]
    3F1E X-ray 3.00 F 1-101 [» ]
    3F1G X-ray 3.00 F 1-101 [» ]
    3MR8 X-ray 3.62 F 1-101 [» ]
    3MS0 X-ray 3.62 F 1-101 [» ]
    3PYN X-ray 3.50 F 1-101 [» ]
    3PYQ X-ray 3.50 F 1-101 [» ]
    3PYS X-ray 3.40 F 1-101 [» ]
    3PYU X-ray 3.40 F 1-101 [» ]
    4KBT X-ray 3.86 F 1-101 [» ]
    4KBV X-ray 3.86 F 1-101 [» ]
    4KCY X-ray 3.50 F 1-101 [» ]
    4KD0 X-ray 3.50 F 1-101 [» ]
    4KD8 X-ray 3.50 F 1-101 [» ]
    4KDA X-ray 3.50 F 1-101 [» ]
    4KDG X-ray 4.00 F 1-101 [» ]
    4KDJ X-ray 4.00 F 1-101 [» ]
    4KFH X-ray 3.40 F 1-101 [» ]
    4KFK X-ray 3.40 F 1-101 [» ]
    4KVB X-ray 4.20 F 1-101 [» ]
    4L6K X-ray 3.40 F 1-101 [» ]
    4L6M X-ray 3.40 F 1-101 [» ]
    ProteinModelPortali P62666.
    SMRi P62666. Positions 1-101.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAS82082 ; AAS82082 ; TT_C1740 .
    GeneIDi 2775242.
    KEGGi tth:TTC1740.
    PATRICi 23953947. VBITheThe54392_1739.

    Phylogenomic databases

    eggNOGi COG0360.
    KOi K02990.
    OMAi KACERRR.
    OrthoDBi EOG6P33DH.

    Enzyme and pathway databases

    BioCyci TTHE262724:GCAT-1778-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei P62666.

    Family and domain databases

    Gene3Di 3.30.70.60. 1 hit.
    HAMAPi MF_00360. Ribosomal_S6.
    InterProi IPR000529. Ribosomal_S6.
    IPR020815. Ribosomal_S6_CS.
    IPR020814. Ribosomal_S6_plastid/chlpt.
    IPR014717. Transl_elong_EF1B/ribosomal_S6.
    [Graphical view ]
    Pfami PF01250. Ribosomal_S6. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54995. SSF54995. 1 hit.
    TIGRFAMsi TIGR00166. S6. 1 hit.
    PROSITEi PS01048. RIBOSOMAL_S6. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HB27 / ATCC BAA-163 / DSM 7039.

    Entry informationi

    Entry nameiRS6_THET2
    AccessioniPrimary (citable) accession number: P62666
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: July 19, 2004
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome

    Documents

    1. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3