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Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Located on the outer edge of the platform on the body of the 30S subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6
Gene namesi
Name:rpsF
Synonyms:rps6
Ordered Locus Names:TT_C1740
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001768621 – 10130S ribosomal protein S6Add BLAST101

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18 (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC1740.

Structurei

Secondary structure

1101
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi2 – 10Combined sources9
Beta strandi12 – 14Combined sources3
Helixi16 – 32Combined sources17
Beta strandi36 – 40Combined sources5
Beta strandi47 – 52Combined sources6
Beta strandi55 – 57Combined sources3
Beta strandi59 – 62Combined sources4
Beta strandi65 – 67Combined sources3
Helixi69 – 71Combined sources3
Helixi72 – 80Combined sources9
Beta strandi82 – 84Combined sources3
Beta strandi85 – 92Combined sources8

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20F1-101[»]
4V4IX-ray3.71g1-101[»]
4V4JX-ray3.83g1-101[»]
4V63X-ray3.21AF/CF1-101[»]
4V67X-ray3.00AF/CF1-101[»]
4V7PX-ray3.62AF/DF1-101[»]
4V83X-ray3.50AF/CF1-101[»]
4V84X-ray3.40AF/CF1-101[»]
4V9JX-ray3.86AF/CF1-101[»]
4V9KX-ray3.50AF/CF1-101[»]
4V9LX-ray3.50AF/CF1-101[»]
4V9MX-ray4.00AF/CF1-101[»]
4V9NX-ray3.40AF/CF1-101[»]
4V9QX-ray3.40BF/DF1-101[»]
4W29X-ray3.80AF/CF1-101[»]
4XEJX-ray3.80AS06/BS061-101[»]
5J4DX-ray3.10OA/TC1-101[»]
ProteinModelPortaliP62666.
SMRiP62666.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62666.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG41082AW. Bacteria.
COG0360. LUCA.
KOiK02990.
OMAiVKDRPEW.

Family and domain databases

CDDicd00473. bS6. 1 hit.
Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6. 1 hit.
InterProiView protein in InterPro
IPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
PANTHERiPTHR21011. PTHR21011. 1 hit.
PfamiView protein in Pfam
PF01250. Ribosomal_S6. 1 hit.
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
PROSITEiView protein in PROSITE
PS01048. RIBOSOMAL_S6. 1 hit.

Sequencei

Sequence statusi: Complete.

P62666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY
60 70 80 90 100
PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN

A
Length:101
Mass (Da):11,973
Last modified:July 19, 2004 - v1
Checksum:i4FEE8005C74902E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82082.1.
RefSeqiWP_011174099.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82082; AAS82082; TT_C1740.
KEGGitth:TT_C1740.

Similar proteinsi

Entry informationi

Entry nameiRS6_THET2
AccessioniPrimary (citable) accession number: P62666
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: July 19, 2004
Last modified: September 27, 2017
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families