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Protein

30S ribosomal protein S6

Gene

rpsF

Organism
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Located on the outer edge of the platform on the body of the 30S subunit.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1778-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S6
Gene namesi
Name:rpsF
Synonyms:rps6
Ordered Locus Names:TT_C1740
OrganismiThermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Taxonomic identifieri262724 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000592 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10110130S ribosomal protein S6PRO_0000176862Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S18 (By similarity).By similarity

Protein-protein interaction databases

STRINGi262724.TTC1740.

Structurei

Secondary structure

1
101
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi2 – 109Combined sources
Beta strandi12 – 143Combined sources
Helixi16 – 3217Combined sources
Beta strandi36 – 405Combined sources
Beta strandi47 – 526Combined sources
Beta strandi55 – 573Combined sources
Beta strandi59 – 624Combined sources
Beta strandi65 – 673Combined sources
Helixi69 – 713Combined sources
Helixi72 – 809Combined sources
Beta strandi82 – 843Combined sources
Beta strandi85 – 928Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20F1-101[»]
4V4IX-ray3.71g1-101[»]
4V4JX-ray3.83g1-101[»]
4V63X-ray3.21AF/CF1-101[»]
4V67X-ray3.00AF/CF1-101[»]
4V7PX-ray3.62AF/DF1-101[»]
4V83X-ray3.50AF/CF1-101[»]
4V84X-ray3.40AF/CF1-101[»]
4V9JX-ray3.86AF/CF1-101[»]
4V9KX-ray3.50AF/CF1-101[»]
4V9LX-ray3.50AF/CF1-101[»]
4V9MX-ray4.00AF/CF1-101[»]
4V9NX-ray3.40AF/CF1-101[»]
4V9QX-ray3.40BF/DF1-101[»]
4W29X-ray3.80AF/CF1-101[»]
4XEJX-ray3.80AS06/BS061-101[»]
5J4DX-ray3.10OA/TC1-101[»]
ProteinModelPortaliP62666.
SMRiP62666. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP62666.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S6P family.Curated

Phylogenomic databases

eggNOGiENOG41082AW. Bacteria.
COG0360. LUCA.
KOiK02990.
OMAiVKDRPEW.
OrthoDBiEOG6P33DH.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
PROSITEiPS01048. RIBOSOMAL_S6. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P62666-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRYEVNIVL NPNLDQSQLA LEKEIIQRAL ENYGARVEKV EELGLRRLAY
60 70 80 90 100
PIAKDPQGYF LWYQVEMPED RVNDLARELR IRDNVRRVMV VKSQEPFLAN

A
Length:101
Mass (Da):11,973
Last modified:July 19, 2004 - v1
Checksum:i4FEE8005C74902E5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82082.1.
RefSeqiWP_011174099.1. NC_005835.1.

Genome annotation databases

EnsemblBacteriaiAAS82082; AAS82082; TT_C1740.
KEGGitth:TTC1740.
PATRICi23953947. VBITheThe54392_1739.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE017221 Genomic DNA. Translation: AAS82082.1.
RefSeqiWP_011174099.1. NC_005835.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4KVBX-ray4.20F1-101[»]
4V4IX-ray3.71g1-101[»]
4V4JX-ray3.83g1-101[»]
4V63X-ray3.21AF/CF1-101[»]
4V67X-ray3.00AF/CF1-101[»]
4V7PX-ray3.62AF/DF1-101[»]
4V83X-ray3.50AF/CF1-101[»]
4V84X-ray3.40AF/CF1-101[»]
4V9JX-ray3.86AF/CF1-101[»]
4V9KX-ray3.50AF/CF1-101[»]
4V9LX-ray3.50AF/CF1-101[»]
4V9MX-ray4.00AF/CF1-101[»]
4V9NX-ray3.40AF/CF1-101[»]
4V9QX-ray3.40BF/DF1-101[»]
4W29X-ray3.80AF/CF1-101[»]
4XEJX-ray3.80AS06/BS061-101[»]
5J4DX-ray3.10OA/TC1-101[»]
ProteinModelPortaliP62666.
SMRiP62666. Positions 1-101.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi262724.TTC1740.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAS82082; AAS82082; TT_C1740.
KEGGitth:TTC1740.
PATRICi23953947. VBITheThe54392_1739.

Phylogenomic databases

eggNOGiENOG41082AW. Bacteria.
COG0360. LUCA.
KOiK02990.
OMAiVKDRPEW.
OrthoDBiEOG6P33DH.

Enzyme and pathway databases

BioCyciTTHE262724:GCAT-1778-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP62666.

Family and domain databases

Gene3Di3.30.70.60. 1 hit.
HAMAPiMF_00360. Ribosomal_S6.
InterProiIPR000529. Ribosomal_S6.
IPR020815. Ribosomal_S6_CS.
IPR020814. Ribosomal_S6_plastid/chlpt.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
[Graphical view]
PfamiPF01250. Ribosomal_S6. 1 hit.
[Graphical view]
SUPFAMiSSF54995. SSF54995. 1 hit.
TIGRFAMsiTIGR00166. S6. 1 hit.
PROSITEiPS01048. RIBOSOMAL_S6. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB27 / ATCC BAA-163 / DSM 7039.

Entry informationi

Entry nameiRS6_THET2
AccessioniPrimary (citable) accession number: P62666
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: July 19, 2004
Last modified: July 6, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.